| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sde_3239 |
|---|
| Symbol | |
|---|
| ID | 3965729 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Saccharophagus degradans 2-40 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007912 |
|---|
| Strand | + |
|---|
| Start bp | 4130713 |
|---|
| End bp | 4132629 |
|---|
| Gene Length | 1917 bp |
|---|
| Protein Length | 638 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 47% |
|---|
| IMG OID | 637922336 |
|---|
| Product | cellulase |
|---|
| Protein accession | YP_528708 |
|---|
| Protein GI | 90022881 |
|---|
| COG category | [G] Carbohydrate transport and metabolism |
|---|
| COG ID | [COG2730] Endoglucanase |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 9 |
|---|
| Plasmid unclonability p-value | 0.00277111 |
|---|
| Plasmid hitchhiking | Yes |
|---|
| Plasmid clonability | hitchhiker |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 14 |
|---|
| Fosmid unclonability p-value | 0.266356 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGACTTTCA CAAGAATGAA ATCATCACAC CAAGGCGCGT GTCGACCAAG GTCTTCCACC
CTACAGCGAC TAATCGCCTC ATCACTTACC ACCGCATGTT TGCTAGCAGC GTCTACTTTT
GCCGACGTAG CGCCGTTAAC CGTAGATGGC AACCGCATTC TCAGCGGTGG CCAAGAGGCT
AGCTTTGCCG GTAACAGTTT GTTTTGGAGC AACAATTATT GGGGCGGTGA GAAATACTAC
ACAGCCGAAA CTGTTAACTG GTTAAAACAA GACTGGGGCG CAACACTAGT GCGCGCGGCC
ATGGGTGTAG AAGATAACGG CGGCTACCTA GATGACAAAG AAGGCAACAA ACAAAAGGTA
AAAACCGTTG TAGATGCTGC TATTGCCAAC GACATGTATG TAATTATCGA TTGGCACAGC
CACCACGCCG AAGACCACAA AAGTGAAGCC ATTGCTTTTT TTGAGGATAT GGCGCGCACC
TACGGCAATA AAAAACACGT TATTTACGAA ATTTATAACG AGCCTTTACA AATTTCGTGG
AGCAACACAA TTAAACCCTA CGCCGAAGAT GTAATTAGAG CTATTCGCGC GATAGACCCC
GACAACTTAA TTATTGTTGG TACGCCAACG TGGTCGCAAG ATGTAGACGT AGCATCGCAA
GACCCCATTA CCGGCTACGC CAATATTGCC TACACATTGC ACTTTTACGC AGGCACCCAC
AAACAATCTT TACGAGACAA AGCGCAAACC GCACTTAACA ACGGCATAGC GCTTTTCGCA
ACAGAGTGGG GAACAGTAAA TGCAAACGGT GATGGCGCTG TAAACACCAC CGAAACAGAC
AAGTGGATGA CGTTCTTTAA AACCAACCAC ATAAGCCACG CAAACTGGGC GCTAAACGAC
AAATCAGAAG GCGCTTCTGC ATTAAACCCC GGAGCCAGCC CCAATGGCAA CTGGAGCAAC
GCCGACTTAA CCACATCGGG TAAGTACGTA AAAAACATTA TCAAAAACTG GAACGACGGC
ACGCCGGGAG GCAGCTCTTC AAGCTCGTCC GGCGGCTCAA CCAGTTCCTC CTCAAGCTCA
TCTAGCTCTA ATTCCAGCTC TGGTGCTGGC AAAGTAAATT TACCCGCACG CATTGAAGCC
GAAAACTATA ACAGTGCACC GGTAGAAACA ACTGCAGGCA ATAGTGGCGG CAGCGTTTCA
CAATGTACAT ACAGAGGGCT AAATGTAGAC GTACAAGACG CAAGCGAAGG CACTTGTAAT
ATTGGCTGGA CAGCAGCAGG CGAAAAAGTT ACCTACAACA TAGGCACAGC AAATAATACT
TACAATATTG CACTTCGCAC CGCATCGCTT GATGCAGGCA AGCGCGTATC GGTATATGTA
GGCAACACCC TCGCCGACAC AATAAGCACC CAAGGTGGCG GCTGGCAAAA TTGGAAGACG
CAAACCATCC CCAATGTATA TATTCCATCA AACTCAGTTA TTACCGTGGA ATTCTACGAT
GGCCGCACCA ACCTTAACTA CTTAAACATT AGTGCAGCTT CGGGGTCTTC CTCTTCAAGC
TCCTCATCTA GCTCGTCAAC GTCTAGCTCT TCTTCGAGCT CATCTTCTAG CTCTTCAGGT
GGTGGCAGTT GTAGCAGCTA TATAGATATA CCTTGGAATA CTCGCACCGA AGTTACCCTA
ACAAGTGGCG CCTGCGTTCG CTTTAACCAA AACCTTTCGG GCAAAACCCT ACAAGTGTGG
GATAGCGATG CAAACTCATC GTGCGATTTC CGGGGCACAG TTACAACAGT AGGCGGCACT
GGCAGTTTAA ATGTAAGCAG CAACTATGTT TCGTCTAAGA GCCTAACAGG AACCAAACTT
ACATTTAATT CAGCAAGTAA TAACAATTGT AAGTACGTTA AAGTTCGTGC TTATTAG
|
|---|
| Protein sequence | MTFTRMKSSH QGACRPRSST LQRLIASSLT TACLLAASTF ADVAPLTVDG NRILSGGQEA
SFAGNSLFWS NNYWGGEKYY TAETVNWLKQ DWGATLVRAA MGVEDNGGYL DDKEGNKQKV
KTVVDAAIAN DMYVIIDWHS HHAEDHKSEA IAFFEDMART YGNKKHVIYE IYNEPLQISW
SNTIKPYAED VIRAIRAIDP DNLIIVGTPT WSQDVDVASQ DPITGYANIA YTLHFYAGTH
KQSLRDKAQT ALNNGIALFA TEWGTVNANG DGAVNTTETD KWMTFFKTNH ISHANWALND
KSEGASALNP GASPNGNWSN ADLTTSGKYV KNIIKNWNDG TPGGSSSSSS GGSTSSSSSS
SSSNSSSGAG KVNLPARIEA ENYNSAPVET TAGNSGGSVS QCTYRGLNVD VQDASEGTCN
IGWTAAGEKV TYNIGTANNT YNIALRTASL DAGKRVSVYV GNTLADTIST QGGGWQNWKT
QTIPNVYIPS NSVITVEFYD GRTNLNYLNI SAASGSSSSS SSSSSSTSSS SSSSSSSSSG
GGSCSSYIDI PWNTRTEVTL TSGACVRFNQ NLSGKTLQVW DSDANSSCDF RGTVTTVGGT
GSLNVSSNYV SSKSLTGTKL TFNSASNNNC KYVKVRAY
|
|---|
| |