| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sde_3232 |
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| Symbol | |
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| ID | 3965705 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Saccharophagus degradans 2-40 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007912 |
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| Strand | - |
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| Start bp | 4105263 |
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| End bp | 4106759 |
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| Gene Length | 1497 bp |
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| Protein Length | 498 aa |
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| Translation table | 11 |
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| GC content | 44% |
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| IMG OID | 637922329 |
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| Product | hypothetical protein |
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| Protein accession | YP_528701 |
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| Protein GI | 90022874 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG2199] FOG: GGDEF domain |
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| TIGRFAM ID | [TIGR00229] PAS domain S-box
[TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 17 |
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| Plasmid unclonability p-value | 0.0640076 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 15 |
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| Fosmid unclonability p-value | 0.305585 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGATTCGAA TAAATCCTGC CGTTCGATTA AGTTTCGGGC TTGTTATTTT GATGCTTTCT
ATCTTGCTGT TGGCACAGGC GCTAGGGTTA ACACCTAATG TAGAGAAAAA ACAGCTAGCT
GCGCGGCAGC AAATATCAGA AACCTTGGCG TTTCAAGTTT TACTGGCTAT GTCGCGTATG
GATGAGCGCC TACTACAGCA AATGATAGAT AATGCAGTGA TGCGCAACCC CGAACTGGAA
AGTGCTGGTG TTCGGTTTCC TACGGGTGGG TATATGCGCT ACACCGAAGA TCACGATAAA
AAATGGCTGC TTAAAGAAAG TAATCACTCA AGCCCTGAAT TTGTAGAAAT TCCTTTAGTG
CTTAGCGGTG TAAATCGCGG CGCACTTGAA ATTACTTACG TACCACTAAC CGCAGGCGAA
AAAAGTTATT TCGGTTTATC GAATACCGTT TTTCTTGTGC TGTTTTTGTG TTGCTCTGCG
TTTATAGGGT TTTGGTTTTT TATTAAGCGA GCACTGCATC ATTTAGATCC CAGCTCTGTT
GTGCCAGCGC GCGTGCGCAA TGCAATGAAC GTGTTAGCTG AAGGTGTATT TATTTTAGAT
AAGCGCGAAC AAATTGTACT GGTGAATACC GCACTAACTA GCAAACTAAA ATCAGATGAG
CGCAGGTTGC TTGGTAGAAA AGCGAGCGCA TTAGGGTGGA AAACTGACGA CAGCGAAAAG
TCATTACCCT GGGAAAAAAC CATTGCCACT GGCGAAAAGC AAATGGATAT TCGTTTAGAA
ATGCCAGTGA ATAAAAATGA AACCAAGGTG TTTAGGGTTA ATGCTGTACC TATTCTCGAC
GAGAAAGGAA ATAATCAAGG TGTAATAGCC AGCTTCGACG ATGTGTCTGA GCTGGAAGCA
AAAAACGAGC AGCTACAACT TTTGGTGGGT AAATTAGCTG CTATTCAAGG TGCGATTGAA
GATAAAAACC GCAAACTTGA GTATTTGGCA TCTCGCGATC CATTAACCGA TTGCTATAAT
CGACGGGCAA TGCGTGAGAG GTTAGATGAT GAGTTCGCTA AGGCGCAGAA CTCCGGTAAA
GACCTCGTTT GTATCATGCT CGATATAGAT CATTTTAAAC GAGTAAACGA TACATATGGC
CACGGCGTGG GGGACGTAGT CATTAAAATG GTTGCCCAAG TTGTAAAAGA AGCTGTACGC
GATAGCGACA TCGTCGCGCG GTTTGGCGGT GAAGAGTTTT GTGTTGTTTT ACCCAATGCA
ACTGTTGAAC AGGTAAAAAT AATTGCCAAA CGCTGTCGCA TGACCATTGA AACCCAAAAC
TGCGGCGGGG TAAAAGTAAC CTCCAGCTTT GGTATTGCGG CGCTCAGTCT GGGAGCAAAA
TCGCCCAACG ATTTAATTCA CCAAGCCGAC GAGGCGTTGT ACAACTCCAA ACAAAACGGC
CGCAATATGG TAAGTGTTTG GCAACCATCA ATGGTCATAG AATCTGGGCC TAAATAA
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| Protein sequence | MIRINPAVRL SFGLVILMLS ILLLAQALGL TPNVEKKQLA ARQQISETLA FQVLLAMSRM
DERLLQQMID NAVMRNPELE SAGVRFPTGG YMRYTEDHDK KWLLKESNHS SPEFVEIPLV
LSGVNRGALE ITYVPLTAGE KSYFGLSNTV FLVLFLCCSA FIGFWFFIKR ALHHLDPSSV
VPARVRNAMN VLAEGVFILD KREQIVLVNT ALTSKLKSDE RRLLGRKASA LGWKTDDSEK
SLPWEKTIAT GEKQMDIRLE MPVNKNETKV FRVNAVPILD EKGNNQGVIA SFDDVSELEA
KNEQLQLLVG KLAAIQGAIE DKNRKLEYLA SRDPLTDCYN RRAMRERLDD EFAKAQNSGK
DLVCIMLDID HFKRVNDTYG HGVGDVVIKM VAQVVKEAVR DSDIVARFGG EEFCVVLPNA
TVEQVKIIAK RCRMTIETQN CGGVKVTSSF GIAALSLGAK SPNDLIHQAD EALYNSKQNG
RNMVSVWQPS MVIESGPK
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