Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Sde_3232 |
Symbol | |
ID | 3965705 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Saccharophagus degradans 2-40 |
Kingdom | Bacteria |
Replicon accession | NC_007912 |
Strand | - |
Start bp | 4105263 |
End bp | 4106759 |
Gene Length | 1497 bp |
Protein Length | 498 aa |
Translation table | 11 |
GC content | 44% |
IMG OID | 637922329 |
Product | hypothetical protein |
Protein accession | YP_528701 |
Protein GI | 90022874 |
COG category | [T] Signal transduction mechanisms |
COG ID | [COG2199] FOG: GGDEF domain |
TIGRFAM ID | [TIGR00229] PAS domain S-box [TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
Num covering plasmid clones | 17 |
Plasmid unclonability p-value | 0.0640076 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 15 |
Fosmid unclonability p-value | 0.305585 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGATTCGAA TAAATCCTGC CGTTCGATTA AGTTTCGGGC TTGTTATTTT GATGCTTTCT ATCTTGCTGT TGGCACAGGC GCTAGGGTTA ACACCTAATG TAGAGAAAAA ACAGCTAGCT GCGCGGCAGC AAATATCAGA AACCTTGGCG TTTCAAGTTT TACTGGCTAT GTCGCGTATG GATGAGCGCC TACTACAGCA AATGATAGAT AATGCAGTGA TGCGCAACCC CGAACTGGAA AGTGCTGGTG TTCGGTTTCC TACGGGTGGG TATATGCGCT ACACCGAAGA TCACGATAAA AAATGGCTGC TTAAAGAAAG TAATCACTCA AGCCCTGAAT TTGTAGAAAT TCCTTTAGTG CTTAGCGGTG TAAATCGCGG CGCACTTGAA ATTACTTACG TACCACTAAC CGCAGGCGAA AAAAGTTATT TCGGTTTATC GAATACCGTT TTTCTTGTGC TGTTTTTGTG TTGCTCTGCG TTTATAGGGT TTTGGTTTTT TATTAAGCGA GCACTGCATC ATTTAGATCC CAGCTCTGTT GTGCCAGCGC GCGTGCGCAA TGCAATGAAC GTGTTAGCTG AAGGTGTATT TATTTTAGAT AAGCGCGAAC AAATTGTACT GGTGAATACC GCACTAACTA GCAAACTAAA ATCAGATGAG CGCAGGTTGC TTGGTAGAAA AGCGAGCGCA TTAGGGTGGA AAACTGACGA CAGCGAAAAG TCATTACCCT GGGAAAAAAC CATTGCCACT GGCGAAAAGC AAATGGATAT TCGTTTAGAA ATGCCAGTGA ATAAAAATGA AACCAAGGTG TTTAGGGTTA ATGCTGTACC TATTCTCGAC GAGAAAGGAA ATAATCAAGG TGTAATAGCC AGCTTCGACG ATGTGTCTGA GCTGGAAGCA AAAAACGAGC AGCTACAACT TTTGGTGGGT AAATTAGCTG CTATTCAAGG TGCGATTGAA GATAAAAACC GCAAACTTGA GTATTTGGCA TCTCGCGATC CATTAACCGA TTGCTATAAT CGACGGGCAA TGCGTGAGAG GTTAGATGAT GAGTTCGCTA AGGCGCAGAA CTCCGGTAAA GACCTCGTTT GTATCATGCT CGATATAGAT CATTTTAAAC GAGTAAACGA TACATATGGC CACGGCGTGG GGGACGTAGT CATTAAAATG GTTGCCCAAG TTGTAAAAGA AGCTGTACGC GATAGCGACA TCGTCGCGCG GTTTGGCGGT GAAGAGTTTT GTGTTGTTTT ACCCAATGCA ACTGTTGAAC AGGTAAAAAT AATTGCCAAA CGCTGTCGCA TGACCATTGA AACCCAAAAC TGCGGCGGGG TAAAAGTAAC CTCCAGCTTT GGTATTGCGG CGCTCAGTCT GGGAGCAAAA TCGCCCAACG ATTTAATTCA CCAAGCCGAC GAGGCGTTGT ACAACTCCAA ACAAAACGGC CGCAATATGG TAAGTGTTTG GCAACCATCA ATGGTCATAG AATCTGGGCC TAAATAA
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Protein sequence | MIRINPAVRL SFGLVILMLS ILLLAQALGL TPNVEKKQLA ARQQISETLA FQVLLAMSRM DERLLQQMID NAVMRNPELE SAGVRFPTGG YMRYTEDHDK KWLLKESNHS SPEFVEIPLV LSGVNRGALE ITYVPLTAGE KSYFGLSNTV FLVLFLCCSA FIGFWFFIKR ALHHLDPSSV VPARVRNAMN VLAEGVFILD KREQIVLVNT ALTSKLKSDE RRLLGRKASA LGWKTDDSEK SLPWEKTIAT GEKQMDIRLE MPVNKNETKV FRVNAVPILD EKGNNQGVIA SFDDVSELEA KNEQLQLLVG KLAAIQGAIE DKNRKLEYLA SRDPLTDCYN RRAMRERLDD EFAKAQNSGK DLVCIMLDID HFKRVNDTYG HGVGDVVIKM VAQVVKEAVR DSDIVARFGG EEFCVVLPNA TVEQVKIIAK RCRMTIETQN CGGVKVTSSF GIAALSLGAK SPNDLIHQAD EALYNSKQNG RNMVSVWQPS MVIESGPK
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