| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sde_3230 |
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| Symbol | |
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| ID | 3965703 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Saccharophagus degradans 2-40 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007912 |
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| Strand | + |
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| Start bp | 4103364 |
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| End bp | 4104260 |
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| Gene Length | 897 bp |
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| Protein Length | 298 aa |
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| Translation table | 11 |
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| GC content | 48% |
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| IMG OID | 637922327 |
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| Product | regulatory protein, LysR |
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| Protein accession | YP_528699 |
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| Protein GI | 90022872 |
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| COG category | [K] Transcription |
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| COG ID | [COG0583] Transcriptional regulator |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 30 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 18 |
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| Fosmid unclonability p-value | 0.796191 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGATAAAC TCACCTGTAT GCGGGCGTAT TGCCAAGTGG TTAAAGCCGG AAGTTTTTCC
GCGGCTGCGC GTGAATTAAA CCTTTCGAAG GTGTTAGTAA GTCGTTATGT TTCAGAGCTA
GAGGCGGATT TAGGCGTACG CTTACTGCAG CGCACCACGC GCAAAATGAG CGTAACCGCA
GAGGGGCAAG CATATTTTGA GCGCAGCCTA GTGGTATTGC AGGATGTAAC AGAACTTGAA
GACGCAATAA AAAATAAGAC CGGGGCCATA ACAGGTAAGT TGCGACTCGC CGCCCCCACA
GAGGCCTTTT CTGTAGAACA TCTTATGCCG CTAATTGGCG AGTTTGCGCA AGCACACCCC
AGCGTTGAGT TTGATATTGA GATGAGCGAC CGCTACACGG ATATTGTGGA CGAAGGTTAC
GACCTCGCGA TTCGCATAGG CAAACTAAAA GATTCCAGCT TAGTGGCGCG CAAACTGGCG
GATATGCAAG TGATTCTTTG CGCAAGCCCT CAATACATAG CCAGTAACAC GCCTATAAGC
GCACCAGAAG ACTTAAACAC CCACACACAT ATTGTGGATA GCAATTTTTT AAATGGCGCC
AATTGGCCCT TTAAGCAGCA AGAAACCGTA GTCAACATTA AACCGCAGCC CATGTTTTTG
ATTAACAACT CGCCAGCTGC ACGCGCCTTG TTACTACAGG GGCTTGGCGT AGGTGTGTGC
CCTTCTTTTA CGGTAAGAGA ACAGTTGCAA ACAGGTGAAT TGGTGCAGTT ACTACCCGAA
TGGGAGCTAA GCAAAGGCGG TATTTACGTG GTGTACAGCC ACAGAAAACA TCTTTCTGCC
AAAGTAAGTG GCTTTGTGGA TGCGCTTGTA GAGCATTTCA GCCAGCGCAT CTGTTAA
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| Protein sequence | MDKLTCMRAY CQVVKAGSFS AAARELNLSK VLVSRYVSEL EADLGVRLLQ RTTRKMSVTA
EGQAYFERSL VVLQDVTELE DAIKNKTGAI TGKLRLAAPT EAFSVEHLMP LIGEFAQAHP
SVEFDIEMSD RYTDIVDEGY DLAIRIGKLK DSSLVARKLA DMQVILCASP QYIASNTPIS
APEDLNTHTH IVDSNFLNGA NWPFKQQETV VNIKPQPMFL INNSPAARAL LLQGLGVGVC
PSFTVREQLQ TGELVQLLPE WELSKGGIYV VYSHRKHLSA KVSGFVDALV EHFSQRIC
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