| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sde_3195 |
|---|
| Symbol | gatB |
|---|
| ID | 3965648 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Saccharophagus degradans 2-40 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007912 |
|---|
| Strand | + |
|---|
| Start bp | 4072445 |
|---|
| End bp | 4073887 |
|---|
| Gene Length | 1443 bp |
|---|
| Protein Length | 480 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 51% |
|---|
| IMG OID | 637922292 |
|---|
| Product | aspartyl/glutamyl-tRNA amidotransferase subunit B |
|---|
| Protein accession | YP_528664 |
|---|
| Protein GI | 90022837 |
|---|
| COG category | [J] Translation, ribosomal structure and biogenesis |
|---|
| COG ID | [COG0064] Asp-tRNAAsn/Glu-tRNAGln amidotransferase B subunit (PET112 homolog) |
|---|
| TIGRFAM ID | [TIGR00133] glutamyl-tRNA(Gln) and/or aspartyl-tRNA(Asn) amidotransferase, B subunit |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 16 |
|---|
| Plasmid unclonability p-value | 0.0627818 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 38 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGAATGGG AAACCGTTAT CGGGCTTGAA GTACACGTTC AGCTCGCCAC CAAAACAAAA
ATCTTTTCTG GCGCCAGCAC CGCTTTTGGT GCCGAGCCAA ATACACAGGC CTGCGCCATT
GACCTAGCCA TGCCGGGCAC CTTGCCCTCC CCCAACGCCA AAGCATTTGA ATACGCCATT
ATGTTTGGCT TGGCGGTTAA CGCAGAAATT GGCAAGCGCT CTGTGTTTGA ACGCAAAAAC
TATTTTTACC CCGACTCACC CAAGGGCTAC CAAACGACGC AGTTAGAGCA ACCCATTGTT
GGTGCGGGCT ATATCGATAT TGAACTGGAT GACGGCAGCA CAAAGCGTAT CCGCATCCAC
CACGCGCACC TCGAAGAAGA TGCGGGCAAA TCTTTGCACG AAGATTTCCA CGATATGACA
GGTATCGACC TCAACCGCGC AGGCACGCCA CTCATCGAGG TAGTGACCGA ACCCGACATT
AGCAACAAAG CCGAAGCTGT TGCTTTCGCG CGCAAATTGC ACGCCATTGT CACGTCACTG
GGAATAGGCG ACGGCGACAT GTCGCAGGGG TCTATGCGCT TCGACGTGAA CATTTCTGTG
CGCTTAAAAG GCCAAGAGCT TGGTACGCGC ACCGAAACCA AAAACCTAAA CTCCTTCCGC
TTTATGGAGC GCTGCATTGA TCAAGAAGTG CAACGTCAAA TAGAAGTGCT GGAAGACGGC
GGTAAAATTA CCCAAGAAAC GCGCCTGTAC AATGGCGACA CCCATACCGC CCGCCCAATG
CGCAGCAAAG AAGAAGCCAA CGACTACCGC TATTTCCCCT GCCCAGATTT ACTACCGGTA
GAAATTACTG ACGAATACAT TCAAAGCTTG CGCGATAAAT TGCCAGAGCT ACCGGACGCA
CGCAAAGCGC GCTTTATTGA GCAGTACGGC CTATCCGATT ACGACGCGGG CCTGCTTGGT
TCCGACGCCA ACACCGCTCA CTATTTTGAA GTCTGCGCCA AAGCCTGTGA CGACGCCAAG
TTAAGTGCAA ACTGGGTAGC TGGTGAGCTT GCGGCACGTT TAAACAACGA AGAGCTCGCC
ATACAAAACA GCCCAGTTAA CGCCGAGCAG CTAGCAGGCT TAATTGCACG CATTAAAGAT
CAAACCATCT CCAACAAAAT AGCCAAACAG GTATTCGAAG CCATGTGGCA AGGCGAAGGG
GATGCAGATA CAGTGATTGA AGCCAAAGGC TTGAAGCAGG TATCTGACAG TGGCGCACTA
GAAAAAATGG TTGACGATGT GATGGCAGCC AACCAGCAGC AAGTAGACGC CTACCGCGCG
GCCGAGCCAG ACAAACGCAA AAAAATGTTG GGCTTCTTTG TGGGGCAAAT TATGAAAGCC
TCTAAAGGCC AAGCCAACCC ACAGCAACTA AACCAAATTT TGTTGAGCAA ACTCGACAGC
TAA
|
|---|
| Protein sequence | MEWETVIGLE VHVQLATKTK IFSGASTAFG AEPNTQACAI DLAMPGTLPS PNAKAFEYAI
MFGLAVNAEI GKRSVFERKN YFYPDSPKGY QTTQLEQPIV GAGYIDIELD DGSTKRIRIH
HAHLEEDAGK SLHEDFHDMT GIDLNRAGTP LIEVVTEPDI SNKAEAVAFA RKLHAIVTSL
GIGDGDMSQG SMRFDVNISV RLKGQELGTR TETKNLNSFR FMERCIDQEV QRQIEVLEDG
GKITQETRLY NGDTHTARPM RSKEEANDYR YFPCPDLLPV EITDEYIQSL RDKLPELPDA
RKARFIEQYG LSDYDAGLLG SDANTAHYFE VCAKACDDAK LSANWVAGEL AARLNNEELA
IQNSPVNAEQ LAGLIARIKD QTISNKIAKQ VFEAMWQGEG DADTVIEAKG LKQVSDSGAL
EKMVDDVMAA NQQQVDAYRA AEPDKRKKML GFFVGQIMKA SKGQANPQQL NQILLSKLDS
|
|---|
| |