Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Sde_3179 |
Symbol | |
ID | 3965613 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Saccharophagus degradans 2-40 |
Kingdom | Bacteria |
Replicon accession | NC_007912 |
Strand | + |
Start bp | 4054172 |
End bp | 4055695 |
Gene Length | 1524 bp |
Protein Length | 507 aa |
Translation table | 11 |
GC content | 50% |
IMG OID | 637922276 |
Product | RNA polymerase factor sigma-54 |
Protein accession | YP_528648 |
Protein GI | 90022821 |
COG category | [K] Transcription |
COG ID | [COG1508] DNA-directed RNA polymerase specialized sigma subunit, sigma54 homolog |
TIGRFAM ID | [TIGR02395] RNA polymerase sigma-54 factor |
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Plasmid Coverage information |
Num covering plasmid clones | 38 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 34 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGAAGCAAT CCCTACAGCT AAAGCTTGGT CAACAACTTA CCATGACCCC GCAATTGCAG CAGGCCATTC GCCTTCTACA ATTGTCGACC CTTGACCTGC AACACGAAAT TCAAGAAGCG CTAGACAGCA ACCCTATGCT GGAAGCCTCT GAAGATGACT TTGATGGCGG CGACGTAGAG GCCAGCAGCG ACGATAACGC TGAAGCGAAA ACTGCGAGCA CGACAGAAGA AAAACCCGCA GCGGAAAAAG TAGAAGACAG CTACGAAACC ACCGACAACA GCGGTGAGCT GGAATGGAAT GACGACATTC CAAAAGACTT GGCCGTAGAC ACCAACTGGG ATGACATCTA CCAAACCTCA GGCCCTGCTA CCGGCTTAGC CCGCAACGAT GAAGACGACC CCGATTACGA ATCTCGCCGC GGCAATTCCG AATCCCTGCA GGATCACCTC AGCTGGCAGC TCAACCTCAC GCCAATGTCT GACCGCGATA AAGAGATCGC AGAGGCCATT ATTGATGCCG TTGAACCCAG CGGCATGCTT TGCCAAACAG CTGAAGAAAT ATTTTCGGGG CTTGCAGCCC ACGACGAAGA GCTAGAGCTC GACGAAGTAC TCGCCGTACT GCACCGTGTA CAACAATTTG ACCCACCCGG TGTTGCCAGT CAAAACGTGC GCGAATGTCT GCTTATTCAA CTTAACCAGT TTGAACTGGA TCAAACCAGC CCCGAGCTAA AACTAGCCAA GAATATTGTT GATCAGTACT TAGATGTACT GGCCGCGCGC GATTTCAAAC AGCTTATGCG TAAGCTGAAA GTAAAAGAGC AAGACTTACA GGCAGCCATT GCCGTTATTC AAGGGCTCAA CCCGCGGCCA GGCGAATCCA TCGGCAGCGA CTCGACCGAA TATGTGATTC CCGACGTTTT TGTATCTAAA GAAAACGACC GCTGGACTGT GCGACTCAAC CCTGAAATCG CCCCTAAGCT GCGTATTAAC TCGGGTTATG CATCCTTGGT AAAACGCGCC GATACCAGCG CCGACAACAC CTTTTTACGC GATAACCTGC AAGAGGCGCG CTGGTTTCTA AAAAGCCTGC AGAGCCGCAA CGAAACACTT TTAAAGGTTG CCACCTGTAT AGTCGAAAAA CAGCAGGGCT TCTTAGACCA GGGCCCTGAA GCCATGCGCC CAATGGTACT GCACGATGTA GCAGAAACCG TCGAGATGCA CGAATCAACC ATTTCACGTG TTACCACGCA AAAATACATG CACACTCCGC AAGGTATTTT TGAGTTGAAG TACTTTTTTT CTAGCCATGT TGCAACGGAT TCCGGCGGTG AGTGCTCTTC CACTGCCATT CGCGCAATAA TCAAAAAGCT GGTAGCCGCA GAAAATGCAC GCAAACCGCT TAGCGACTCC AAAATAACCG ACATCTTAGC CGAGCAAGGT ATTAAGGTAG CGCGCCGCAC CATAGCCAAA TATCGCGAGT CCCTTAATAT CCCACCATCA AACGAAAGAA AACGCTTGGT TTAA
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Protein sequence | MKQSLQLKLG QQLTMTPQLQ QAIRLLQLST LDLQHEIQEA LDSNPMLEAS EDDFDGGDVE ASSDDNAEAK TASTTEEKPA AEKVEDSYET TDNSGELEWN DDIPKDLAVD TNWDDIYQTS GPATGLARND EDDPDYESRR GNSESLQDHL SWQLNLTPMS DRDKEIAEAI IDAVEPSGML CQTAEEIFSG LAAHDEELEL DEVLAVLHRV QQFDPPGVAS QNVRECLLIQ LNQFELDQTS PELKLAKNIV DQYLDVLAAR DFKQLMRKLK VKEQDLQAAI AVIQGLNPRP GESIGSDSTE YVIPDVFVSK ENDRWTVRLN PEIAPKLRIN SGYASLVKRA DTSADNTFLR DNLQEARWFL KSLQSRNETL LKVATCIVEK QQGFLDQGPE AMRPMVLHDV AETVEMHEST ISRVTTQKYM HTPQGIFELK YFFSSHVATD SGGECSSTAI RAIIKKLVAA ENARKPLSDS KITDILAEQG IKVARRTIAK YRESLNIPPS NERKRLV
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