Gene Sde_3179 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSde_3179 
Symbol 
ID3965613 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameSaccharophagus degradans 2-40 
KingdomBacteria 
Replicon accessionNC_007912 
Strand
Start bp4054172 
End bp4055695 
Gene Length1524 bp 
Protein Length507 aa 
Translation table11 
GC content50% 
IMG OID637922276 
ProductRNA polymerase factor sigma-54 
Protein accessionYP_528648 
Protein GI90022821 
COG category[K] Transcription 
COG ID[COG1508] DNA-directed RNA polymerase specialized sigma subunit, sigma54 homolog 
TIGRFAM ID[TIGR02395] RNA polymerase sigma-54 factor 


Plasmid Coverage information

Num covering plasmid clones38 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones34 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAAGCAAT CCCTACAGCT AAAGCTTGGT CAACAACTTA CCATGACCCC GCAATTGCAG 
CAGGCCATTC GCCTTCTACA ATTGTCGACC CTTGACCTGC AACACGAAAT TCAAGAAGCG
CTAGACAGCA ACCCTATGCT GGAAGCCTCT GAAGATGACT TTGATGGCGG CGACGTAGAG
GCCAGCAGCG ACGATAACGC TGAAGCGAAA ACTGCGAGCA CGACAGAAGA AAAACCCGCA
GCGGAAAAAG TAGAAGACAG CTACGAAACC ACCGACAACA GCGGTGAGCT GGAATGGAAT
GACGACATTC CAAAAGACTT GGCCGTAGAC ACCAACTGGG ATGACATCTA CCAAACCTCA
GGCCCTGCTA CCGGCTTAGC CCGCAACGAT GAAGACGACC CCGATTACGA ATCTCGCCGC
GGCAATTCCG AATCCCTGCA GGATCACCTC AGCTGGCAGC TCAACCTCAC GCCAATGTCT
GACCGCGATA AAGAGATCGC AGAGGCCATT ATTGATGCCG TTGAACCCAG CGGCATGCTT
TGCCAAACAG CTGAAGAAAT ATTTTCGGGG CTTGCAGCCC ACGACGAAGA GCTAGAGCTC
GACGAAGTAC TCGCCGTACT GCACCGTGTA CAACAATTTG ACCCACCCGG TGTTGCCAGT
CAAAACGTGC GCGAATGTCT GCTTATTCAA CTTAACCAGT TTGAACTGGA TCAAACCAGC
CCCGAGCTAA AACTAGCCAA GAATATTGTT GATCAGTACT TAGATGTACT GGCCGCGCGC
GATTTCAAAC AGCTTATGCG TAAGCTGAAA GTAAAAGAGC AAGACTTACA GGCAGCCATT
GCCGTTATTC AAGGGCTCAA CCCGCGGCCA GGCGAATCCA TCGGCAGCGA CTCGACCGAA
TATGTGATTC CCGACGTTTT TGTATCTAAA GAAAACGACC GCTGGACTGT GCGACTCAAC
CCTGAAATCG CCCCTAAGCT GCGTATTAAC TCGGGTTATG CATCCTTGGT AAAACGCGCC
GATACCAGCG CCGACAACAC CTTTTTACGC GATAACCTGC AAGAGGCGCG CTGGTTTCTA
AAAAGCCTGC AGAGCCGCAA CGAAACACTT TTAAAGGTTG CCACCTGTAT AGTCGAAAAA
CAGCAGGGCT TCTTAGACCA GGGCCCTGAA GCCATGCGCC CAATGGTACT GCACGATGTA
GCAGAAACCG TCGAGATGCA CGAATCAACC ATTTCACGTG TTACCACGCA AAAATACATG
CACACTCCGC AAGGTATTTT TGAGTTGAAG TACTTTTTTT CTAGCCATGT TGCAACGGAT
TCCGGCGGTG AGTGCTCTTC CACTGCCATT CGCGCAATAA TCAAAAAGCT GGTAGCCGCA
GAAAATGCAC GCAAACCGCT TAGCGACTCC AAAATAACCG ACATCTTAGC CGAGCAAGGT
ATTAAGGTAG CGCGCCGCAC CATAGCCAAA TATCGCGAGT CCCTTAATAT CCCACCATCA
AACGAAAGAA AACGCTTGGT TTAA
 
Protein sequence
MKQSLQLKLG QQLTMTPQLQ QAIRLLQLST LDLQHEIQEA LDSNPMLEAS EDDFDGGDVE 
ASSDDNAEAK TASTTEEKPA AEKVEDSYET TDNSGELEWN DDIPKDLAVD TNWDDIYQTS
GPATGLARND EDDPDYESRR GNSESLQDHL SWQLNLTPMS DRDKEIAEAI IDAVEPSGML
CQTAEEIFSG LAAHDEELEL DEVLAVLHRV QQFDPPGVAS QNVRECLLIQ LNQFELDQTS
PELKLAKNIV DQYLDVLAAR DFKQLMRKLK VKEQDLQAAI AVIQGLNPRP GESIGSDSTE
YVIPDVFVSK ENDRWTVRLN PEIAPKLRIN SGYASLVKRA DTSADNTFLR DNLQEARWFL
KSLQSRNETL LKVATCIVEK QQGFLDQGPE AMRPMVLHDV AETVEMHEST ISRVTTQKYM
HTPQGIFELK YFFSSHVATD SGGECSSTAI RAIIKKLVAA ENARKPLSDS KITDILAEQG
IKVARRTIAK YRESLNIPPS NERKRLV