| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sde_3177 |
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| Symbol | |
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| ID | 3965611 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Saccharophagus degradans 2-40 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007912 |
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| Strand | + |
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| Start bp | 4052679 |
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| End bp | 4053218 |
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| Gene Length | 540 bp |
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| Protein Length | 179 aa |
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| Translation table | 11 |
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| GC content | 53% |
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| IMG OID | 637922274 |
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| Product | alpha amylase domain-containing protein |
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| Protein accession | YP_528646 |
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| Protein GI | 90022819 |
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| COG category | [S] Function unknown |
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| COG ID | [COG1934] Uncharacterized protein conserved in bacteria |
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| TIGRFAM ID | [TIGR03002] lipopolysaccharide transport periplasmic protein LptA |
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Plasmid Coverage information |
| Num covering plasmid clones | 38 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 33 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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| |
Sequence |
| Gene sequence | ATGACCCAAT CTAAATTAAG CCGTATAGCG CAGCTATGTT TACGCGCAGG GCTGCTTGCC
GCACTTGCTG CCAACCCAGC ACAGGCGCTG CCTAGTGACC GCTCGCAACC GCTTAGCACA
GATGCAGACA AGCTCGAACT AGACGATAAA AGCGGCACCA CCACGCTTTA CGGCAACGTA
ATTATTGAGC AGGGCAGCAT GCGGATAACC GCAGACAAAG TGATTTTGCA TTACAACAAA
AACAAACTCA CTCACGTTAT CGCCACCGGG GAACCGGCTC ATTACAGCCA AGTGCCCCGC
GCCAACCAAG AACCCGTACA AGCGCGCGCC AAACGCCTTG AATATCATAT CGAGCAGGAA
ACCCTAACCC TGCTAAACAA CGCCTCACTG GTGCAAGATG GCGGCACCAG CCTAAGCGGC
AACCGCATTG ACTACGACGT GAAAAAATCC CTCGTAAAAG CCGGTAGCGA CATAGAAGAA
GGCGAGAAAC GACGCGTTCG CCTTGTTATT CCAGCCAAAA CCCTCAGCAA CCAAGAATAA
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| Protein sequence | MTQSKLSRIA QLCLRAGLLA ALAANPAQAL PSDRSQPLST DADKLELDDK SGTTTLYGNV
IIEQGSMRIT ADKVILHYNK NKLTHVIATG EPAHYSQVPR ANQEPVQARA KRLEYHIEQE
TLTLLNNASL VQDGGTSLSG NRIDYDVKKS LVKAGSDIEE GEKRRVRLVI PAKTLSNQE
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