| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sde_3167 |
|---|
| Symbol | |
|---|
| ID | 3965601 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Saccharophagus degradans 2-40 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007912 |
|---|
| Strand | + |
|---|
| Start bp | 4043505 |
|---|
| End bp | 4044659 |
|---|
| Gene Length | 1155 bp |
|---|
| Protein Length | 384 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 51% |
|---|
| IMG OID | 637922264 |
|---|
| Product | DEAD/DEAH box helicase-like |
|---|
| Protein accession | YP_528636 |
|---|
| Protein GI | 90022809 |
|---|
| COG category | [O] Posttranslational modification, protein turnover, chaperones |
|---|
| COG ID | [COG0265] Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain |
|---|
| TIGRFAM ID | [TIGR02038] periplasmic serine pepetdase DegS |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 40 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 26 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCATGCAC TTTTGAAATT TTTAATATTC ATCCGCTGGC CAGTAGTGAC AGGCCTGCTA
GCGTCCATGG CGATACTTTT GTTTTACCCC TCTTTAAGGC CCACTCACAA CACAGGTCAA
GAACCCGCCT TTTTAGACTT TTCTGGCCTC GAACCCAAAG AACAGTGGCA TGGGCCAGTG
TCTTACGCGG CAGCAGTAAG CAAGGCGTCG GCATCGGTAG TAAACATTTA TACCCGCAAA
CAATCTGAGC AGCGCTCACA CCCCTACTTT ACCGACCCGT TCTTTCGCCG TTTTTTAAGT
AGAGGTAACG CTCCACAGCA ACCCAAATTT GATTTAGGTT CGGGGGTTAT CGTAACCAAA
GACGGCTACC TACTTACCAA CAATCACGTT ATTAGCGACG CAGAAGAAAT TGTAGTCGCC
CTGCAAGACG GCCGCGATGC ACAAGCGCGC ATAGTGGGCA CCAACCAAAA AAACGACCTT
GCAGTATTAA AAATTGATTT AGACAACCTG CGCCCCATCT CTATGGGCTC GGCAGAAACC
GCGCAAGTGG GTGATGTAGT ACTCGCCATT GGCAACCCCT TTGGCGTTGG CCAAACGGTT
ACCCAAGGCA TTATTAGCGC AACCCGAAGA CGCGGGTTAA ACATTGCAGA TTTCGAAAAT
TTCATTCAAA CAGACGCCGC CATCAACCCC GGCAATTCTG GCGGGGCGCT TATTGATACG
CGCGGCCAAC TGGTTGGCAT CGCCACCGCC AATCTCGCTC AGTCGGGCTA CACCGGCGGT
ATTGGCTTTG CCATTCCCAC CGATACAGCC ATGCAAACGC TGCACGATAT AATCGAACAC
GGGCGCGTAG TTCGCGGCTG GCTTGGGGTA GATGTAGAAG GTTTGGCAAT TCGCCCGCCC
CAAGGGCAAA CCACTCAGCG CCTAGGCGGT TTTTTAATTA CTGGCGTAGA TGCCAATAGC
CCCGCAGAGA GAGCTGGCCT GCGAGCAATG GATATTATTA TTCGCATAAA CGACAAGGAG
GGAAACAACC TTGTTTGGGG CGAGCAAGAA ATTGCCGAAT CGCGCCCTGG CGATAAAATA
GAAATAGAAA TAATAAGGGA TGGGCAAGTG CAGGTGGTGG GCGTAGTGCT TGGCGAAAAC
CCTTCTTCAG GCTAA
|
|---|
| Protein sequence | MHALLKFLIF IRWPVVTGLL ASMAILLFYP SLRPTHNTGQ EPAFLDFSGL EPKEQWHGPV
SYAAAVSKAS ASVVNIYTRK QSEQRSHPYF TDPFFRRFLS RGNAPQQPKF DLGSGVIVTK
DGYLLTNNHV ISDAEEIVVA LQDGRDAQAR IVGTNQKNDL AVLKIDLDNL RPISMGSAET
AQVGDVVLAI GNPFGVGQTV TQGIISATRR RGLNIADFEN FIQTDAAINP GNSGGALIDT
RGQLVGIATA NLAQSGYTGG IGFAIPTDTA MQTLHDIIEH GRVVRGWLGV DVEGLAIRPP
QGQTTQRLGG FLITGVDANS PAERAGLRAM DIIIRINDKE GNNLVWGEQE IAESRPGDKI
EIEIIRDGQV QVVGVVLGEN PSSG
|
|---|
| |