| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sde_3164 |
|---|
| Symbol | rplM |
|---|
| ID | 3965598 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Saccharophagus degradans 2-40 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007912 |
|---|
| Strand | - |
|---|
| Start bp | 4040928 |
|---|
| End bp | 4041356 |
|---|
| Gene Length | 429 bp |
|---|
| Protein Length | 142 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 47% |
|---|
| IMG OID | 637922261 |
|---|
| Product | 50S ribosomal protein L13 |
|---|
| Protein accession | YP_528633 |
|---|
| Protein GI | 90022806 |
|---|
| COG category | [J] Translation, ribosomal structure and biogenesis |
|---|
| COG ID | [COG0102] Ribosomal protein L13 |
|---|
| TIGRFAM ID | [TIGR01066] ribosomal protein L13, bacterial type |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 25 |
|---|
| Plasmid unclonability p-value | 0.0732563 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 29 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAAGACTA TTAGTGCCAA ACCTGAAACA GTAAAACGCG ACTGGTACAT CATCGATGCT
GACGGTAAAA CGCTCGGCCG CATGGCAGCA GAAATTGCTC ATCGCCTGCG CGGCAAGCAT
AAGCCAGAGT TTACTCCACA CGTAGACACT GGTGATTACA TTGTTGTAAT CAATGCAGAA
AAAGTGCGTG TTACTGGTCG TAAAGCAACC GACAAGATGT ACTACAGCCA CACCGGTTTT
ATCGGTGGAA TTAAGTCCAT TAGCTTTGAA AAGCTTATTG ATAAGGCGCC CGAGCGCACT
ATCCAGAACG CGGTTAAAGG CATGTTGCCC CGCGGTCCAT TGGGTCGTGC AATGTTTAAA
AAGTTGAAGG TTTACGGTGG AAGTGAGCAT CCTCACACTG CCCAGCAACC TCAAGAACTT
AATATATAA
|
|---|
| Protein sequence | MKTISAKPET VKRDWYIIDA DGKTLGRMAA EIAHRLRGKH KPEFTPHVDT GDYIVVINAE
KVRVTGRKAT DKMYYSHTGF IGGIKSISFE KLIDKAPERT IQNAVKGMLP RGPLGRAMFK
KLKVYGGSEH PHTAQQPQEL NI
|
|---|
| |