Gene Sde_3164 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSde_3164 
SymbolrplM 
ID3965598 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameSaccharophagus degradans 2-40 
KingdomBacteria 
Replicon accessionNC_007912 
Strand
Start bp4040928 
End bp4041356 
Gene Length429 bp 
Protein Length142 aa 
Translation table11 
GC content47% 
IMG OID637922261 
Product50S ribosomal protein L13 
Protein accessionYP_528633 
Protein GI90022806 
COG category[J] Translation, ribosomal structure and biogenesis 
COG ID[COG0102] Ribosomal protein L13 
TIGRFAM ID[TIGR01066] ribosomal protein L13, bacterial type 


Plasmid Coverage information

Num covering plasmid clones25 
Plasmid unclonability p-value0.0732563 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones29 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAAGACTA TTAGTGCCAA ACCTGAAACA GTAAAACGCG ACTGGTACAT CATCGATGCT 
GACGGTAAAA CGCTCGGCCG CATGGCAGCA GAAATTGCTC ATCGCCTGCG CGGCAAGCAT
AAGCCAGAGT TTACTCCACA CGTAGACACT GGTGATTACA TTGTTGTAAT CAATGCAGAA
AAAGTGCGTG TTACTGGTCG TAAAGCAACC GACAAGATGT ACTACAGCCA CACCGGTTTT
ATCGGTGGAA TTAAGTCCAT TAGCTTTGAA AAGCTTATTG ATAAGGCGCC CGAGCGCACT
ATCCAGAACG CGGTTAAAGG CATGTTGCCC CGCGGTCCAT TGGGTCGTGC AATGTTTAAA
AAGTTGAAGG TTTACGGTGG AAGTGAGCAT CCTCACACTG CCCAGCAACC TCAAGAACTT
AATATATAA
 
Protein sequence
MKTISAKPET VKRDWYIIDA DGKTLGRMAA EIAHRLRGKH KPEFTPHVDT GDYIVVINAE 
KVRVTGRKAT DKMYYSHTGF IGGIKSISFE KLIDKAPERT IQNAVKGMLP RGPLGRAMFK
KLKVYGGSEH PHTAQQPQEL NI