| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sde_3155 |
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| Symbol | |
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| ID | 3965589 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Saccharophagus degradans 2-40 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007912 |
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| Strand | - |
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| Start bp | 4031832 |
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| End bp | 4033601 |
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| Gene Length | 1770 bp |
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| Protein Length | 589 aa |
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| Translation table | 11 |
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| GC content | 47% |
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| IMG OID | 637922252 |
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| Product | ribonuclease E and G |
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| Protein accession | YP_528624 |
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| Protein GI | 90022797 |
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| COG category | [R] General function prediction only |
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| COG ID | [COG4147] Predicted symporter |
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| TIGRFAM ID | [TIGR00813] transporter, SSS family
[TIGR03648] probable sodium:solute symporter, VC_2705 subfamily |
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Plasmid Coverage information |
| Num covering plasmid clones | 33 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 28 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGAATTAC AAACCTTAAT CTACATTGTT GTAGGCAGTA CTTTTGCCTT GTATTTGGGT
ATTGCGGTGT GGGCGCGCGC AGGTAGCACC GGAGAGTTTT ATGTGGCCGG TGGCGGGGTA
CATCCCATTG CGAACGGTAT GGCAACCGCG GCAGATTGGA TGTCTGCAGC GTCATTTATT
TCTATGGCAG GCTTAATTGC ATTTAAAGGC TACGATGCCT CGGTATACCT AATGGGGTGG
ACGGGCGGTT ATGTATTGCT TGCGCTTTTG CTGGCACCTT ACCTACGAAA ATACGGCAAG
TTTACCGTAC CCGAGTTTAT AGGTGATCGC TTTTACTCTA AAACCGCGCG TATTGTGGCA
GTGGTATGTT TGATAGTGGC ATCAGTCACT TATGTTATTG GGCAAATGAA AGGTGTAGGC
GTGGCATTCG GGCGGTTTTT AGAAGTACCT TTCGAAACCG GTGTATTAAT AGGGATGGCT
ATAGTGTTTT TCTATGCCGT GCTAGGCGGT ATGAAAGGTA TAACCTACAC CCAAATTGCG
CAGTATGTGG TACTGATTTT TGCATTTACT GTGCCCGCTG TTTTTATATC GCTGCAACTT
ACAGGTAACC CGCTACCGCA ATTAGGGTTG GGGAGTGAAT TGCATAACGG CGTGTACTTG
TTGGATAAAC TCGATCAAGT TTTAGTGGAT TTAGGCTTTA ATAAATATAC TGAACAAAAA
GAGTCCACAA TTAATATGCT GTTGCTTACC TTATCGCTAA TGATTGGTAC AGCAGGCTTG
CCGCATGTAA TTATTCGCTT TTTTACTGTG CCTAAAGTTA AAGATGCACG CAGTTCTGCG
GGCTGGGCGC TGGTGTTTAT TGCAATTTTA TACACCACGG CACCTGCGGT TGGGGCTATG
TCTTTCTTCA ATTTTATTAA TACCGTGCAA GTAGGCGAAG TAGGCGCGCA AGATGGCAAC
TTGGTTTACG AGGAGCGCCC GCAGTGGTTT AAAACTTGGG AAACTACAGG CTTACTCGCG
TTTGAAGATA AAAATGACGA TGGCCGAATT CAATACTATA ACGACAAGAA CCCCGAGTTT
GTTGCGCAAC ATGCGGATAA GGGCTGGCAA GGTAGCGAAA TGGTTACCTT AGATCGCGAT
ATTATGGTGT TGGCTAACCC AGAAATAGCG GGCCTACCTA ACTGGGTTAT TGCCCTTGTT
GCTGCAGGTG GCGTTGCGGC GGCATTGTCT ACGGCGGCAG GGTTGTTGTT GGCGATTGCA
TCTGCGGTTT CGCACGATTT ATTAAAGGGC GTGTTTATGC CCAAAATATC GGAGAAGCGC
GAACTGATGG CCAGTCGAAT TGCCATGGCC GGTGCTATTT TAATTGCGGG CTATTTGGGG
ATGAACCCGC CAGGATTTGC CGCGCAGGTA GTGGCGCTGG CATTTGGCTT GGCTGCTTCG
TCTATATTCC CCGCGCTAAT GATGGGTATT TTTAGCAAGC GAGTAAACAA TGTTGGCGCG
GTGGCGGGTA TGCTATCTGG TCTGGGCATA ACCATTGTGT ATATCTTTAT TTATAAAGGT
TGGTTCTTTA TTCCAGCAAC CAATAACTTC CCGAATACGT CTGATTACTG GTTATTGGGT
ATCTCCCCAG AGGCATTTGG TGCTGTGGGC GCTGCAGTGA ACTTTACTGT GGCAACCGTT
GTGTCTCGCT TTACGCCAGC GCCACCCAAA AATGTACAGG ATATGATTCA AGATATTCGC
GTACCTAAGG GCTTGCCGGC TAGTAAATAG
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| Protein sequence | MELQTLIYIV VGSTFALYLG IAVWARAGST GEFYVAGGGV HPIANGMATA ADWMSAASFI
SMAGLIAFKG YDASVYLMGW TGGYVLLALL LAPYLRKYGK FTVPEFIGDR FYSKTARIVA
VVCLIVASVT YVIGQMKGVG VAFGRFLEVP FETGVLIGMA IVFFYAVLGG MKGITYTQIA
QYVVLIFAFT VPAVFISLQL TGNPLPQLGL GSELHNGVYL LDKLDQVLVD LGFNKYTEQK
ESTINMLLLT LSLMIGTAGL PHVIIRFFTV PKVKDARSSA GWALVFIAIL YTTAPAVGAM
SFFNFINTVQ VGEVGAQDGN LVYEERPQWF KTWETTGLLA FEDKNDDGRI QYYNDKNPEF
VAQHADKGWQ GSEMVTLDRD IMVLANPEIA GLPNWVIALV AAGGVAAALS TAAGLLLAIA
SAVSHDLLKG VFMPKISEKR ELMASRIAMA GAILIAGYLG MNPPGFAAQV VALAFGLAAS
SIFPALMMGI FSKRVNNVGA VAGMLSGLGI TIVYIFIYKG WFFIPATNNF PNTSDYWLLG
ISPEAFGAVG AAVNFTVATV VSRFTPAPPK NVQDMIQDIR VPKGLPASK
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