Gene Sde_3121 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSde_3121 
Symbol 
ID3965521 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameSaccharophagus degradans 2-40 
KingdomBacteria 
Replicon accessionNC_007912 
Strand
Start bp3992562 
End bp3994790 
Gene Length2229 bp 
Protein Length742 aa 
Translation table11 
GC content48% 
IMG OID637922218 
Productglucan endo-1,3-beta-D-glucosidase 
Protein accessionYP_528590 
Protein GI90022763 
COG category[G] Carbohydrate transport and metabolism 
COG ID[COG2273] Beta-glucanase/Beta-glucan synthetase 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones20 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones24 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAAAAAAC TAAAGCTTCT AGAACTTTCG CTGGTGGTGT TGGTAGCCCT AGGGCTAGCG 
AGCTGCGGCG GTTCTGACGA CAAAAAAACG CCAGACCCAG TAGAAGAACC CGTGGGTGAA
CCAGAATCAG AGCCTGAATC AGAGCCAGAA TCTGAACCCG AATCTGAGCC AGAACCAGAA
AACGCATGGC AATTGCTGTG GGAAGATAAT TTCGACAGCG AAATAAGCGC ATCTAACTGG
GGCTTCGAAG TTAACTGCAC CGGCGGGGGT AACAACGAGA AACAGTGTTA TACCGATAGA
GCCGACAACG CTTATGTAGA TGAGGCAGGC ATACTGCACA TAGTTGCCAA AGAGGAAGCA
TTTAGCGGAC CCGCTATTCA GGATGATGAC CCCAACTACA ACCCCGATGA CACATCGGCT
GCGCGCAATT ATACCTCTGC GCGTTTGCGT ACATTAGATA AGTTTGACTT CAAATATGGT
CGAGTCGAAA TTCGTGCGCA AATACCAGGT GGGCAGGGCT CATGGCCTGC ATTGTGGATG
TTGCCAAGTG ACAAAGTATA TGGTGGTTGG CCAGCCAGTG GCGAAATCGA CATTATGGAA
GCGGTTAATT TAGATACTGA TGCGGCCAAT GCCGTGCATG GTACTTTGCA CTACGGTTTA
CAGTGGCCAC AATGGTCGAC GATAGGCGCT TCTTACGAAA CAAATGATGA TTTCACCGGT
GAGTTCCACA CTTATGCCAT TGAGTGGGAA GCAGACCAAA TTCGCTGGTT TGTGGATGGC
GTACACACTC AAACACAGGT GTCCGATAAC TGGTACAACT TTGTATGGGG CGGGCAAGAG
TCCGGCTTTG CTGTGGCTAA CCCGCGTGCA CCTTACGATC AAGAGTTTCA TTTAATCATG
AACGTCGCTA TAGGCGGCAA CTGGCCGGGT GACCCGGACA CGGGTTGGGC ATCTGATCGC
GAAATGCTTG TAGATTATGT GCGTGTGTAC CAGTGTGATT CTGAAGCCGA TGATGGAACA
GGCTGTGCAA ACGCAACCGA CGCCGTTGAT ATTGCTATTT CACCGACCGC AGATGTAGGT
GCGCCATCAC AAGTAGAATA CGACCTATAT AGTGACGGTT TACAAACGCC TGCATTTACC
AACGCCGGCG TAACTCTTGC TGCAAATGTT TGGCAAGAAA CAGAAGGCAA CGTAGTAACT
ACCACTGGCA ACTTGGGCGA CGACCATGGC GATGCTTGGG AAATTACCTT TAATGGTACT
GGTAATGTAT CTATTGCTAT TGCCGAGCAA GACGGCGTGG AAAGCTATGT GCGATTAAAT
GGCGGAACAG CTTGGAGTAA CTACGGCGTA CTAGCGTTTG ATATGTATGT AGATAGCGTG
GATGCCGAAA CTGGCTTTGT TGTTAAAATG GACAGTGTTT ACCCCAATGT AGGTGCTGTA
GATATTGCTA CACCTGCCGC AGGTGAGTGG ACGCGAGTGC ACGTAAAAGT GGCTGATATT
TTAGCTAACC CAATTGCAGG TGGCGGTGGC CTTAACGTTG CGCAAGCGGT TAACTTGTTT
GTACTTGAGC CAACAGGTAC TAAAACAGCA CATGTATATG TAGATAATAT TTCTATTAGC
TGCGCATATA ACTCTACTGC AAAATCTTGG CAGGGTGATA AAACCTGTGA TGTTGCAGCG
GTGCCTACTG CCGATACCTC AGGTATAGAT TTAAGTGGTA ACGAGCTTGT GATTTTTGAT
GAGCAAGAGC CGGATTTTTG GGGTTTTGGG CAGTTTTCTG CTGGTGGTGC TGAAGTAGCA
ATGAGCTTCT TAGCTGACCC AGAAGATGCG AGTCACGGTA ATGTGTTGGG CTTTAGCTAC
CCAGATAGCC AAAACGTTGC CTACTTACAA TCTGCTACAC CGCTTAATTT AAGCGATTGG
GCTGGGGGTA CTATCCAATT CGACATGTAC GTTATTAGCG AGCCTGCTAA TGTAAATTGG
ATGATGAAAG TGGATTGTGT ACACCCTTGT TCATCTGGCG ATATACCGCT CACCACCAAT
ATTGATGGTG TAGTGCCTGC TGTGGGTGTA TGGCAAACCT ATCGCTTTAA CTTAGATGCA
TTAGTTGCTG GCAACCCAGG GTTAGATTTG ACCAAAGTGG ATACGCCGCT AGTAATATTC
CCTGCATGGG ATAACCAAAC CGGTGCTAAC TTCCGTATAG ATAACATTAA ATTTGTTCGG
GCTAACTAG
 
Protein sequence
MKKLKLLELS LVVLVALGLA SCGGSDDKKT PDPVEEPVGE PESEPESEPE SEPESEPEPE 
NAWQLLWEDN FDSEISASNW GFEVNCTGGG NNEKQCYTDR ADNAYVDEAG ILHIVAKEEA
FSGPAIQDDD PNYNPDDTSA ARNYTSARLR TLDKFDFKYG RVEIRAQIPG GQGSWPALWM
LPSDKVYGGW PASGEIDIME AVNLDTDAAN AVHGTLHYGL QWPQWSTIGA SYETNDDFTG
EFHTYAIEWE ADQIRWFVDG VHTQTQVSDN WYNFVWGGQE SGFAVANPRA PYDQEFHLIM
NVAIGGNWPG DPDTGWASDR EMLVDYVRVY QCDSEADDGT GCANATDAVD IAISPTADVG
APSQVEYDLY SDGLQTPAFT NAGVTLAANV WQETEGNVVT TTGNLGDDHG DAWEITFNGT
GNVSIAIAEQ DGVESYVRLN GGTAWSNYGV LAFDMYVDSV DAETGFVVKM DSVYPNVGAV
DIATPAAGEW TRVHVKVADI LANPIAGGGG LNVAQAVNLF VLEPTGTKTA HVYVDNISIS
CAYNSTAKSW QGDKTCDVAA VPTADTSGID LSGNELVIFD EQEPDFWGFG QFSAGGAEVA
MSFLADPEDA SHGNVLGFSY PDSQNVAYLQ SATPLNLSDW AGGTIQFDMY VISEPANVNW
MMKVDCVHPC SSGDIPLTTN IDGVVPAVGV WQTYRFNLDA LVAGNPGLDL TKVDTPLVIF
PAWDNQTGAN FRIDNIKFVR AN