| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sde_3120 |
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| Symbol | |
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| ID | 3965520 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Saccharophagus degradans 2-40 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007912 |
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| Strand | + |
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| Start bp | 3987552 |
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| End bp | 3992513 |
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| Gene Length | 4962 bp |
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| Protein Length | 1653 aa |
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| Translation table | 11 |
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| GC content | 43% |
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| IMG OID | 637922217 |
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| Product | putative periplasmic ligand-binding sensor protein |
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| Protein accession | YP_528589 |
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| Protein GI | 90022762 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG3452] Predicted periplasmic ligand-binding sensor domain |
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| TIGRFAM ID | [TIGR00229] PAS domain S-box |
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Plasmid Coverage information |
| Num covering plasmid clones | 5 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 24 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAACAAAT CATCGTTCAA TTATTTAACT AGAAACAGCA AATGGCTAAT ACCCACTTTT
GCGGCAATAG TACTGTTAAC ACTTGCCATC GCCGTAGATC GTGTTATTTA TAGCCGATTT
GCTTTAGAAG AAAGAACAGC CGTTCATAAC GAAGCAAGCA AGCTGCGTGC GTCTATAGAA
TCGACCATCA ACAGCAATTT ACAAGCTGTG CAAGGGCTAG TCCTTGTGCT TAATGCCTTC
CCGGAGCCAA GCCAAGAAGA GTTTGCTTCT TTCGCAGCGC CGCTTTTTAA TCAAAACACA
CAATTGCGAA ATATAGCCGC CGCGCCAGGC ATGGTTATTA AATACATGCA TCCGCTAGAA
GGCAATGAAG CAGCAATAGG ACTAGACTTT AGAGCCACGC CCGCGCAAAA GGAAGCCGCA
GAGCGTGCCG AGCGAACAGG GCAGCTGGTA TTGGCAGGCC CAGTAAACCT TAAGCAAGGT
GGGCAAGGTT TTATCGGCCG TATACCGGTA TTTACCTATA ACAAACAAAA CAACACTAAA
AGTAGTTGGG GCTTACTCTC CACCGTCATC GACTTAGATC GCTTTTATAG TGCCACGGGC
ATTACACAAT TTAACGAAAC CCTTCAGCTT GCTCTGCGAG GCAAAGATGC CAAAGGCGCA
CAAGGCCAAG TTTTTTATGG CGACGAAGCG CTGTTCCACG CCGATGCGGT ACTACTAGAA
GTAAGCGTAC CTTCCGGCAG CTGGCAACTT GCTATCCTGC CCAAGCAGGG GTGGGCCAAT
AGCGCTGAAG ATTCTGCGCT ATTGCGTATT ATTCTCTTGC TTATCATTCT GGCGATACTT
ATCCCCATTA TAATTTCGGT TAACCTGTTA GCGAACCGCC ACGACAGTGA TTTAAAATTT
CGAGGCCTTT TCGAATTATC TCCAGTTGGC ATAGCACTCA ATAGATTCAC AGATGGCAAG
TACGTAGAAA CGAATACCGC GCTAGAGAAT ATGCTTGGCT ACAGTGCCGA CGAACTACAC
GGTAAAACCT ACCTTGAAAT TACTTCCCCC GTATATGAAG ACCATCAAAA AGCAGTTATA
AACAGCCTTA AAAATTACGG TCGATATGGG CCATATGAAA AGGAATTTAT CCGCCGCGAC
GGCACTCTAC TACCCGTTAT TATGAACGGC ATGCTGGTAA CAGATAGCAA CGGAGAAAAG
CTTATATGGT CTATCGTCGA AGATATTACC TCGCGCAAAC AAGCGGAACT CGCTCTGGCG
CAAAATAGAA AGCAACTTGA ACAAATTATT GATAGCACCT CGGTGGCTAT TTGGGATTGG
AATATAGTTA CAGGTGAAAT TGTTATAAAC GAACGCTGGG CCGAAATAAT AGGCTATTCC
TTAATGGATT TAGAGCCGGT TAGCATCGAC ACATGGACAA ACTTCACTCA CCCCGAGGAC
TTAGATAAAA GTAGCGAATT ACTCAACGCT CATTGGAATG GAGAAAGCAA CCACTACCAG
TGCGAAGCAC GTATGCATCA TAAAGATGGC CACTGGGTAT GGGTACTGGA TTCGGGCAAA
GTTATAGAAT GGACTAGTGA AGGCAAACCG TTAAGGATGG TGGGCACTCA TTTAGATATT
ACCGAACAAA AAGAATCACA AAGGCTAATA GAACAGTCGC AAATCGAGTT AAAAAACTTC
TTTGACCTAT CACCTAACTT CATGTGCATT ATAGATAGAG AAGGTTTTTT TGAGCGCATA
AACGATACAT TTTTGTCTCA ACTAGACTTT ACGCGCGACG ACTTTTTCTC TTGTAAATAT
ATAGACTTCG TTCACCCAGA CGATAGAGAA ATAACACAAG ATCATTTTGA AAAAATGAAA
AGCGGCGCCC TAACCCAAGT ATTTACAAAT CGCTACATGC ATAGCAATGG TGATTACTTG
TACTTACAAT GGTACACATT TGCCGACCCC GCTAGTGGGA TGGTATACAC TACTGCATTA
GACATAACCA ATCAAAAGCT CGATGAAAAG CGCATGGCAA GACAACAAGA AATGTTGCTT
TCTATGAGCG AACAAGGGCG TATTGGAGCT TGGGAGGTAA ACTTAGAAGA ACAACAAATG
TATTGGTCGA CAATGACCAA AGACATTCAC GAAGTAGATG CTAACTACAC CCCTCACTAC
GAAAGCGCGA TTGATTTTTA CAAAGAAGGC GAGAGCCGCG ACACAATAAG TCGCCTTTTA
AACCTTGCTA TTAACAAAGG TATCCCTGCA AGCATAGAGC TGCCCATTAT TACAGCGAAG
CATAACGAAC GCTGGGTGTC GGTAACCGTC CAACCGGAGT TCAGAAATAA GCAATGCATT
CGTCTTTTCG GATCTATTCA AGATATAGAC GCACGTAAAC GCATCGAGCA AGGTGTACAG
CTTGCAAACA CCAAGCTAGA AAAGCAGATG ACATTGGTCA ATGCTATTGC AGCAGCGCAA
GCCAGCTTTA TTCAACAGAC AGATATAGCT ATTGCATTTA GAAACCTACT CGACGGCGTG
CTTGAGTTGG CTGAAAGCGA GTATGGTTTT GTAAGTGAAA TTCTCTACAC AGAAAAAAAC
GAACCCTATA TACGCACCCA TGCAATTGCC AATCGCTCAA CCCACGATAG ATACAACGCA
TTCTTTGCAG CGCAAGGCGA AAACCCCATT GAGTTTTTTA ACTTGGATAG CCTGTTAGGA
GCGGCAGTAA CGAGCTGCAA ACCCGTTATT GCTAATAGCC CAACAACAGA TTCACGCCGC
GCCGGTGTAC CAGATGGCCA CCCTCAACTC GAGTCTTACC TTGGTATACC TATTATATTG
AACGGCAGTA TTATTGGTTT GATTGGGCTG GCTAACAACC CCAATGGTTA CAATCAAGCA
CTTGTCGATT GGCTTGCACC ACTTATAAAT ACCGTAGGCC AAATGATTGA GAATACCCGA
GCAATTAGAG AAAGAGACAA CGCGCAGCAA GCACTAGTAA AAGCCAAAAA CGCGGCCGAA
CTAGCCGCGC GAACCAAAAG TGAATTTTTG GCCATGATGA GCCATGAAAT TCGTACGCCA
CTAAACGGCG TTTTGGGTAT GCTCAATCTT GTTAAACGTA CACAACTTGA AGATAAGCAG
CGCTACCAAA TAGACATAGC CAAGAGTAGC GCCGAATCCC TGCTTAATTT AATCAATGAC
ATATTAGATT TCTCTAAGGT TGATGCAGGC AAGTTAGATT TAGAGGTCGT CGACTTTAAT
ATTATTACAT TACTCGAGGA TATAGCACAT GCCATGGCAG GGCGAGCACT CGAGCGCGGC
AACGAACTTA TCATAGACAC CACCAAGCTA GAATTTACTT ACTTAAGCGG CGACCCAAGC
CGCCTTCGTC AAATACTCGT AAATCTAATA GGCAACGCAA TAAAATTCAC CCAAAATGGT
GAAGTAACAG TCACTGCGAG CCTTACCAAA AACACAAGCG GGTTTAATTT AAATATAAGC
GTGGCAGATA CTGGTATTGG TATAGCGGAA GAAAAAATAC CTCTGTTATT TTCTGCTTTC
ACACAAGTAG ATGCATCCAC CACGAGAAAA TACGGTGGCA CGGGGCTTGG GTTAGCCATT
TGCAAAAAGT TGTGTGCCCT CATGGGTGGA GATATAAATA TTACATCGCA AGAGGGGAAT
GGCTCTGAAT TCAGCTTTCA GATTCTAGTT AAAAACTCTG TAAAAAATAT TGATTTGCCT
CCCCTCATAG AACAAAAAGT AGACCTAAAC GATAAAACAA TTTTTATTGC TGAATCCAAC
CCCAAAAATA CTGCTATTTT AGAAAATATG ATCAGCAGCA AGCGCTGTAT AGCTGTGTCG
AGTTTACCCG ATAGTAACCT AAACCTTCCC AACGAACCTA TAGACGTAGC CTTTATCGAC
AGAAAATTAT TAACATCGAT GGAATCAATC ACCCCGCTAA AAAACAAGCC AAATTTTGCC
AACACACAAT GGCTAATGCT TACAGCGATA AACCAAACAA AAGATATTGA AAATTACACG
GCCAAAGGCT TTGACACTTA CTTAACCAAG CCCATCACCC AGTCGGGTCT TACGCTTTCA
CTAAAATCGT TAAAACTAGA CAGCAATCAA GCAGAATCAG AACAACAACA AACAAGTGAA
AAATTAACAT TACCACAAAG CCCACAGGGC GAAGCATCGC AATTTGCGGC CAGAATATTG
CTAGTGGACG ACAACACCGT TAACCAAGAT GTGGCCAAAA TGATGCTAGA GGATTTTGGC
TTGATAATTG ACGTCGCCAA CAACGGCCTA GAGGCTATAG CCGCACTGGA CGCCTGCTCG
ATTAGAGAGC CCTACTCCTT AATATTGATG GATTGCCAAA TGCCTGAACT AGACGGGTAC
GAAACCACTA AACGTATTAG GAAAGGCGCT ACTGATTTTG ACAATACCAA AATACCCATC
ATAGCCATGA CCGCAAATGC AATGAAAGGC GATAAAGAAA AATGCATTGC CGCAGGTATG
GATGATTACC TAAGTAAACC AATAGAAGCA GACGCATTGG AACACATGCT AAAACTATGG
CTGCCTTTGC ACAATTTCTC GCAGGATTCG AATACACAAG CGACGTCTCA ACACCCACAA
GTTGTCGAGG GATTTTGGCA ACACGACGAG CTACTGGCCA CTCTTAAAGG CCGTGAAGAT
AGGCTTAAAA TATTGGTTGC TTCATTTACT AAACGCATCC CCGCTTTGTT AGAGGAGTTT
GAAGAAGCAA CGGCAAGCAA TGATCTTGAA GCGCTGTCTT TTATTGCGCA TTCGGTTAAG
GGCAGCGCAG GCCAGCTAAA GTGTAACCTT TTATTTGTAT GTGCTTCCGA ACTAGAGCTT
ACAGCTAAAA ATGGCGACCT CACTACCGCA CTCGAATTAA GCCAAAACTT TAAGCAATAC
ACTTTAGATT TTTACAATTT ACTCAACAAA TATTTGGCGT AA
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| Protein sequence | MNKSSFNYLT RNSKWLIPTF AAIVLLTLAI AVDRVIYSRF ALEERTAVHN EASKLRASIE
STINSNLQAV QGLVLVLNAF PEPSQEEFAS FAAPLFNQNT QLRNIAAAPG MVIKYMHPLE
GNEAAIGLDF RATPAQKEAA ERAERTGQLV LAGPVNLKQG GQGFIGRIPV FTYNKQNNTK
SSWGLLSTVI DLDRFYSATG ITQFNETLQL ALRGKDAKGA QGQVFYGDEA LFHADAVLLE
VSVPSGSWQL AILPKQGWAN SAEDSALLRI ILLLIILAIL IPIIISVNLL ANRHDSDLKF
RGLFELSPVG IALNRFTDGK YVETNTALEN MLGYSADELH GKTYLEITSP VYEDHQKAVI
NSLKNYGRYG PYEKEFIRRD GTLLPVIMNG MLVTDSNGEK LIWSIVEDIT SRKQAELALA
QNRKQLEQII DSTSVAIWDW NIVTGEIVIN ERWAEIIGYS LMDLEPVSID TWTNFTHPED
LDKSSELLNA HWNGESNHYQ CEARMHHKDG HWVWVLDSGK VIEWTSEGKP LRMVGTHLDI
TEQKESQRLI EQSQIELKNF FDLSPNFMCI IDREGFFERI NDTFLSQLDF TRDDFFSCKY
IDFVHPDDRE ITQDHFEKMK SGALTQVFTN RYMHSNGDYL YLQWYTFADP ASGMVYTTAL
DITNQKLDEK RMARQQEMLL SMSEQGRIGA WEVNLEEQQM YWSTMTKDIH EVDANYTPHY
ESAIDFYKEG ESRDTISRLL NLAINKGIPA SIELPIITAK HNERWVSVTV QPEFRNKQCI
RLFGSIQDID ARKRIEQGVQ LANTKLEKQM TLVNAIAAAQ ASFIQQTDIA IAFRNLLDGV
LELAESEYGF VSEILYTEKN EPYIRTHAIA NRSTHDRYNA FFAAQGENPI EFFNLDSLLG
AAVTSCKPVI ANSPTTDSRR AGVPDGHPQL ESYLGIPIIL NGSIIGLIGL ANNPNGYNQA
LVDWLAPLIN TVGQMIENTR AIRERDNAQQ ALVKAKNAAE LAARTKSEFL AMMSHEIRTP
LNGVLGMLNL VKRTQLEDKQ RYQIDIAKSS AESLLNLIND ILDFSKVDAG KLDLEVVDFN
IITLLEDIAH AMAGRALERG NELIIDTTKL EFTYLSGDPS RLRQILVNLI GNAIKFTQNG
EVTVTASLTK NTSGFNLNIS VADTGIGIAE EKIPLLFSAF TQVDASTTRK YGGTGLGLAI
CKKLCALMGG DINITSQEGN GSEFSFQILV KNSVKNIDLP PLIEQKVDLN DKTIFIAESN
PKNTAILENM ISSKRCIAVS SLPDSNLNLP NEPIDVAFID RKLLTSMESI TPLKNKPNFA
NTQWLMLTAI NQTKDIENYT AKGFDTYLTK PITQSGLTLS LKSLKLDSNQ AESEQQQTSE
KLTLPQSPQG EASQFAARIL LVDDNTVNQD VAKMMLEDFG LIIDVANNGL EAIAALDACS
IREPYSLILM DCQMPELDGY ETTKRIRKGA TDFDNTKIPI IAMTANAMKG DKEKCIAAGM
DDYLSKPIEA DALEHMLKLW LPLHNFSQDS NTQATSQHPQ VVEGFWQHDE LLATLKGRED
RLKILVASFT KRIPALLEEF EEATASNDLE ALSFIAHSVK GSAGQLKCNL LFVCASELEL
TAKNGDLTTA LELSQNFKQY TLDFYNLLNK YLA
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