| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sde_3064 |
|---|
| Symbol | |
|---|
| ID | 3965407 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Saccharophagus degradans 2-40 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007912 |
|---|
| Strand | - |
|---|
| Start bp | 3918327 |
|---|
| End bp | 3919136 |
|---|
| Gene Length | 810 bp |
|---|
| Protein Length | 269 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 42% |
|---|
| IMG OID | 637922161 |
|---|
| Product | transglutaminase-like |
|---|
| Protein accession | YP_528533 |
|---|
| Protein GI | 90022706 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 31 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 4 |
|---|
| Fosmid unclonability p-value | 0.0000524761 |
|---|
| Fosmid Hitchhiker | Yes |
|---|
| Fosmid clonability | hitchhiker |
|---|
| |
Sequence |
| Gene sequence | ATGGCCTTAG TCCTTAGCAA GAAGAACAGC GAAGCGGATG GGGTTATTCA GAGGTTCCTA
AACAGAGAGA ATGCAATGAC TTGGACAGAA CAAACACTCG CAGCGCTACC AGTAAAAAAC
GGGTTTAGGT TACGTGGCGA AAGTATGACG CGATTGGAGG TGTTCTCTGA TGCTGCATTC
GCGTTTGCGA TGACAATGCT GGTGGTATCT GTGGGCAGTA TTCCCCATAG CTACAGTGAA
TTGATTTTAG CCCTTAAAAA TGTGCCCGCT TTTGCGCTTA GCTTTGCACA AATTGCTGCC
TTTTGGGTGT TTCATCGCAA TTGGAGTAGG CAAGTGGGGC AAGAGGATAA GGTATCCACT
TTTCTCACCT TATTAATGAT TTTTATTATT CTTATTTATG TTTACCCTTT GCGCTTAATG
TTTTCTTCTT TTTTCCATTT TGTAAGTAAT GGCTGGTTAC CAAGTGAATT TTTAATTACC
AGCGCCCGTG AAATGGCAAA TCTATTTATT ATTTATGGTG TAGGCTATGT TGGCTTAACC
AGTGTTATAG GGTTGCTTTA CCTGCATGCG TACCGCTCTG CCACTACGCT TGCATTAAAC
ACAGTGGAAA CTTTACTTGT TAGGCGCAGT ACGCTTATTT GGTTTGCTCA AGTGTGTACT
GGCTTTGTTT CTGTATTGTT TGCTTGGTTA ATGCCAGCTT CTATTGCTGT GTACGCTGGC
TTTGTGTATT TCTTTTTGGC TATAGTTATA CCTCTTATTT ACTATATTAC TGGGCCGCGT
ATTATTGCTG CGCAAAGTGA GCTATCGTGA
|
|---|
| Protein sequence | MALVLSKKNS EADGVIQRFL NRENAMTWTE QTLAALPVKN GFRLRGESMT RLEVFSDAAF
AFAMTMLVVS VGSIPHSYSE LILALKNVPA FALSFAQIAA FWVFHRNWSR QVGQEDKVST
FLTLLMIFII LIYVYPLRLM FSSFFHFVSN GWLPSEFLIT SAREMANLFI IYGVGYVGLT
SVIGLLYLHA YRSATTLALN TVETLLVRRS TLIWFAQVCT GFVSVLFAWL MPASIAVYAG
FVYFFLAIVI PLIYYITGPR IIAAQSELS
|
|---|
| |