| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sde_3059 |
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| Symbol | |
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| ID | 3967664 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Saccharophagus degradans 2-40 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007912 |
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| Strand | + |
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| Start bp | 3911426 |
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| End bp | 3912847 |
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| Gene Length | 1422 bp |
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| Protein Length | 473 aa |
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| Translation table | 11 |
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| GC content | 52% |
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| IMG OID | 637922156 |
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| Product | GntR family transcriptional regulator |
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| Protein accession | YP_528528 |
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| Protein GI | 90022701 |
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| COG category | [E] Amino acid transport and metabolism
[K] Transcription |
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| COG ID | [COG1167] Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 17 |
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| Plasmid unclonability p-value | 0.0865812 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 6 |
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| Fosmid unclonability p-value | 0.000973023 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | ATGTCGCACC TTTACCAAAC CTTGGCCACC GATATAGTTA AACAAATAGA AAACGGCCAT
TACCGCCCCG GCGATAAGCT GCCCGGTATT CGCGCAATAA GCCGCCAGCG CAATGTAAGT
ATTGCCACTA CCCAGTCGGC ATTCAGGGTA TTGGAAGATG ATGGCTGGGT AGACGTTCGC
CCGCGCTCAG GCTTTTATGT GCGCGCTCGC CAAACCGTAA GCCCTATCGT TGCAGCGGCA
CAGTCAGACC CAAAGCCCAG CAATGTTACC GGCCAAGATA TGGCCCTAAG CCTGATAAAA
GCGGCCAATA AACACCATAT ATTACAGCTG GGCGCCGCAG TGCCAGACTT GTCTTTTTTA
CCTGTTCAGC CCATAAGCCA AGCCACCAGC CAAGCCCAAA AGCGCTTTGG CGACCGCGCA
TTAAGCTACG AAATGCCGCC GGGTGCGCTA GAACTTCGCC GCCAAATAGC ACGCCGTATG
GGCGAGGCGG GTTGTGCGGT AAGCAGCGAA GAAATTGTAA TTACAAGCGG ATGCCAGGAA
GCGCTTACTA TCGCCCTAAA GGCCGTCACT AAAGCGGGAG ACATTGTAGC TATAGAATCC
CCCACCTTTT ACGGGCTGTT GCAGGTTATA GAATCTCTTG GCTTAGAAGC CTTAGAAATA
CCCGTAGACC CACAAACAGG TATGAGCCTA GATGCCCTAA AATTGGCCCT AGAGCGCTGG
CCAATTAAAG CCTGTGTTGT AGTGGCCAAC TGCAGTAACC CCTTGGGCTA CACCATGCCC
GACGAGAGTA AGTTGGCACT TACATCACTA CTTACCGAGC ACAACGTGCC CCTTATAGAA
GACGATGTGT ACGGCGACTT AAGCTTCGAT AAGCACCGCC CAGCACTGTG CCGCAGTTTG
GCACCGCAGG CCGATATTAT TTACTGCAGC TCGTTTTCTA AAACCTTAAG CCCTGGGTTG
CGCGTTGGCT GGATAGCCGC CGGTAAGCAC TTGGCGCGCG TAGAGTACTT AAAGTACGTA
AGCAATATAG CCAGCGCTAC CTTGCCGCAA CTTACGGTAG CTCACTTTTT AGAAAGCGGC
CGATACGACC GCTACCTGCG CCAAGCTCGG GGGCAGTACG CGCGTGCGGT TAGCCGCATG
ACCGACGCCG TTTTGCGCTA CTTCCCTGAG GGTACAAGAG TAAGCCAACC CAGAGGCGGC
TTTGTAATAT GGGTGGAACT GCCCTGCGCT ATTAATACAT TTGAACTTGC CCAGCTGGCC
TTAGGCCAAG GTATTAGCAT TGCACCCGGC CCTATATTTT CAGCAAAGCA AAAGTTTAAA
AACGCTATGC GGCTGTCTTG CGCCTGCAAG TGGGATGAAA AAGTAGAAAA AGGCTTAGCC
TGGTTGGGCG CTAGAATTGA ACATATGCAA TTGAGCAAAT AA
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| Protein sequence | MSHLYQTLAT DIVKQIENGH YRPGDKLPGI RAISRQRNVS IATTQSAFRV LEDDGWVDVR
PRSGFYVRAR QTVSPIVAAA QSDPKPSNVT GQDMALSLIK AANKHHILQL GAAVPDLSFL
PVQPISQATS QAQKRFGDRA LSYEMPPGAL ELRRQIARRM GEAGCAVSSE EIVITSGCQE
ALTIALKAVT KAGDIVAIES PTFYGLLQVI ESLGLEALEI PVDPQTGMSL DALKLALERW
PIKACVVVAN CSNPLGYTMP DESKLALTSL LTEHNVPLIE DDVYGDLSFD KHRPALCRSL
APQADIIYCS SFSKTLSPGL RVGWIAAGKH LARVEYLKYV SNIASATLPQ LTVAHFLESG
RYDRYLRQAR GQYARAVSRM TDAVLRYFPE GTRVSQPRGG FVIWVELPCA INTFELAQLA
LGQGISIAPG PIFSAKQKFK NAMRLSCACK WDEKVEKGLA WLGARIEHMQ LSK
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