Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Sde_3057 |
Symbol | |
ID | 3967662 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Saccharophagus degradans 2-40 |
Kingdom | Bacteria |
Replicon accession | NC_007912 |
Strand | - |
Start bp | 3909428 |
End bp | 3910276 |
Gene Length | 849 bp |
Protein Length | 282 aa |
Translation table | 11 |
GC content | 48% |
IMG OID | 637922154 |
Product | branched chain amino acid aminotransferase |
Protein accession | YP_528526 |
Protein GI | 90022699 |
COG category | [E] Amino acid transport and metabolism [H] Coenzyme transport and metabolism |
COG ID | [COG0115] Branched-chain amino acid aminotransferase/4-amino-4-deoxychorismate lyase |
TIGRFAM ID | [TIGR01121] D-amino acid aminotransferase [TIGR01122] branched-chain amino acid aminotransferase, group I |
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Plasmid Coverage information |
Num covering plasmid clones | 39 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 6 |
Fosmid unclonability p-value | 0.000762588 |
Fosmid Hitchhiker | Yes |
Fosmid clonability | hitchhiker |
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Sequence |
Gene sequence | ATGTGTTGGT TAAACGGCAC TATTATACCT GCGAGTGAGG CTTCGGTTTC GGTGTTAGAC CACGGCTTAC TGTATGGCGA CGGGGTGTTT GAGGGAATTC GTTTTTATAA CGGTAAAGTG TTTAAGCTTG CTGAGCACCT ACAGCGCCTG TTTGATTCGG CAAAAATATT ACAGCTAGCT ATGCCCTACA ATGGCCAGCA ACTTACGCGT GCAACCCAAG CGTTAATAGA CGCGTGCCAA TGGTCCAATG GCTACATTCG TTTAGTGGTA ACCCGCGGCC AAGGGCCAAT GGGGTTAGAC CCCCGCCCAT GCCACAGCCC TAACGTGTTT ATTATTGTGG GCCAGTTAAG TGTTGTGGGC GATGATATTC GCAAGCGCGG TGCTAAAGTA ATTATTGCAT CTACACGCAG GCTGGGTGCC GATGGCTTAG ATCCAAGAAT TAAAAGTTTG AATTACTTAA ACCATATACT GGCAAGAATG GAAGCCAATG TAGCCGGTGC CGATGAGGCC ATTTTATTAA ACGCTGCGGG TAGGGTGGCA GAAGGTTCGG CGGATAATGT ATTTGTAGTG CGTCACGGTG AATTGCTAAC GCCGCCAGTT ATAGAAGGGG CACTGGCTGG TATTACGCGG CAAACAATTA TCGACTTGGC CAACGCGCTT AACATTTCCT GTAAAGAAGT CGCGTTAGCG CCCTACGATT TATATACCGC CGACGAATGC TTTTTAACTG GAACAGGGGC AGAGCTTATA CCCGTTGCAA GTGTGGATGG CCGAGAAATA AGCCATTGCA ATGGAGAAAT AACCCAGCGC TTAAGTGAAG CTTACAAACA ACTTACTGGA GCGAGCTAA
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Protein sequence | MCWLNGTIIP ASEASVSVLD HGLLYGDGVF EGIRFYNGKV FKLAEHLQRL FDSAKILQLA MPYNGQQLTR ATQALIDACQ WSNGYIRLVV TRGQGPMGLD PRPCHSPNVF IIVGQLSVVG DDIRKRGAKV IIASTRRLGA DGLDPRIKSL NYLNHILARM EANVAGADEA ILLNAAGRVA EGSADNVFVV RHGELLTPPV IEGALAGITR QTIIDLANAL NISCKEVALA PYDLYTADEC FLTGTGAELI PVASVDGREI SHCNGEITQR LSEAYKQLTG AS
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