Gene Sde_3054 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSde_3054 
Symbol 
ID3967659 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameSaccharophagus degradans 2-40 
KingdomBacteria 
Replicon accessionNC_007912 
Strand
Start bp3907035 
End bp3907745 
Gene Length711 bp 
Protein Length236 aa 
Translation table11 
GC content43% 
IMG OID637922151 
Producthypothetical protein 
Protein accessionYP_528523 
Protein GI90022696 
COG category 
COG ID 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones41 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones
Fosmid unclonability p-value0.000693301 
Fosmid HitchhikerYes 
Fosmid clonabilityhitchhiker 
 

Sequence

Gene sequence
ATGGCCAGTA TAGAATTATT AAATTTTTCC CAGCACGCCA ACTTAGTCGT AAGCGAGGCC 
TTCGAATATA CACGCGAAGC CAATAGCAAT ATGGTGCCCG TTCTACTTAG TGAAGTAGGC
AGCCTTGCAA CTCACTTTCC ATTGTTTTTA ACCAAGAGCG CTCAAACAGG AGAATTTGTT
TGTATAGCCC TTATGGGGTT TTCAGCCGAA GAAAATCTCT ACCTTTTAAA TGGCCTGTGG
AACAGTGATG CATTACCCTT AGCATTCGAA CGCTTGCCAT TTCACGTTGG GCCAAACAAT
GAAGTGTATA TAGATACCCA CAGCCCATTG GTGTCCCAAC AAGATGGCAA GAAAATCTTC
ACCCCTAACG GTGAGCCTTC GAGTTATATG CAAAAAATAT TGCAGTGCTT ATCGTTAATA
CACACCGGTC GCGACGACAC CATTGCGTTT GTACAAACAC TACAAGACAT GCAATTAATT
GAGCCAGTGC AATTAGATGT CACTTTTTGC GACGGCAGCC AAACAAAAAT GGAAGGGTTA
TACACGGTTA GCGACCAGCG TTTAAATAGC CTGTCGGCGC CATTACTAGA CACCCTAAAT
AAACGCGGCT ACCTGAGTGC AGCCATAGTA ATGAACCACT CTATGGGGCT AGTACAACAA
TTGATTAAAA AGAAAAACAC TCAACTAGAA ACCGTAATGT GTGAGAGTTA A
 
Protein sequence
MASIELLNFS QHANLVVSEA FEYTREANSN MVPVLLSEVG SLATHFPLFL TKSAQTGEFV 
CIALMGFSAE ENLYLLNGLW NSDALPLAFE RLPFHVGPNN EVYIDTHSPL VSQQDGKKIF
TPNGEPSSYM QKILQCLSLI HTGRDDTIAF VQTLQDMQLI EPVQLDVTFC DGSQTKMEGL
YTVSDQRLNS LSAPLLDTLN KRGYLSAAIV MNHSMGLVQQ LIKKKNTQLE TVMCES