| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sde_3052 |
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| Symbol | |
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| ID | 3967657 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Saccharophagus degradans 2-40 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007912 |
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| Strand | + |
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| Start bp | 3902677 |
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| End bp | 3905421 |
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| Gene Length | 2745 bp |
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| Protein Length | 914 aa |
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| Translation table | 11 |
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| GC content | 48% |
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| IMG OID | 637922149 |
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| Product | TonB-dependent receptor |
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| Protein accession | YP_528521 |
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| Protein GI | 90022694 |
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| COG category | [P] Inorganic ion transport and metabolism |
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| COG ID | [COG4771] Outer membrane receptor for ferrienterochelin and colicins |
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| TIGRFAM ID | [TIGR01782] TonB-dependent receptor |
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Plasmid Coverage information |
| Num covering plasmid clones | 3 |
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| Plasmid unclonability p-value | 0.00121145 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
| Num covering fosmid clones | 6 |
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| Fosmid unclonability p-value | 0.00160966 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | ATGAGAAATC ACTATACATT TAAAATAAAG CCCATAGCTA TCGCCATCGG TATTGCTGGC
GGCAGCTCTA CTACTGTGCT CGCGCAAAAC AATTCGTTAG AGGAAGTTGT CGTTACGGGT
ATACGCGCAT CACTACAACA AGCAGTAGAT ATTAAGCGTG AAGCTAACGG CGTTGTGGAT
GCAATTTCCG CAGAAGACAT AGGCAAGTTT CCAGATACAA ACCTTGCGGA ATCTCTACAG
CGTATAACCG GTGTATCTAT CGACCGCAGC GGTGGTGAAG GTCGCCAAGT AAGCGTGCGC
GGCATGGGGC CAAGTTTCAA CTTGGTGCTT TTAAACGGTC GCCAAATGCC AAGTAAAGAA
AGTGGCCGTG CGTTTAACTT CGACGAAGTA GCGGCCGAAA TGGTGAGTGG CGTTGAGGTA
TATAAAACAT CGTCCGCTGC GGTGCAATCT GGCGGCATAG GTGCCACCAT TAATATTAAA
ACTGCGCGCC CACTGGATAT TGGCGACAAA ATGGCGGGCA GCGTAAAGTT ATCTAGCGAT
TTAGATGCGG GCGGCACCAC ACCACAAGCC TCTGGTTTGT TCAGCAAAAA CCTAGATGAC
TCTTTTGGCA TTTTACTTGC CGCTAGCTAT CAGCAGCGCG AGTCGCAAGA AGACCAGTTG
CGTGTAACTA AGTGGAACGT AGACCCAGAC GTATCTGGCG TAGCGAATTT CGATAATTCT
GCTAACACCA ATAACCATAT ATTTGTACCT CAACAATCGG CGTTTAACCG CAGGCAAGAT
ACTCGCACAC GCATTAACGG CAATCTAGTG TTGCAATACG CACCTTCCGA CACGCTGACC
GCTACTGCAG ATTTACAATA CTCCGATTTT AAAATAGATC GCTACGCAGA AGAGCTGGCA
TTATGGTTTA GTCAAAATAC TGCGCAATCT ATCGTTACCG ATAAAAACGG TACCGTCGTA
GCCTACGATC AGGGCGCTAG CACCATCGAC TTTTTTACCA AGGCACCCAC CTCACGCACA
GTTAATACCT CAGCCAGCTT AAATGTAGAT TGGGCCATAA CCGACGCCGC AAAATTAAGC
GTAGAACACT CGGCTTCGAC GTCCGAATCC AACCCAGATG GCGAGTACAA CATTAATCAA
TCCGACGTAC AAATAGCACA AAACTGGGGT TTTGCAGTAT CTGGCGATTT AGCCTTCCCA
GTATTCAACT CTGATGCAAC CGCGACACCC TCTGTACAAG ACCCATCGCG CCTGCGCACT
TGGGTTAACG AGTTGTATTC TAACAATTAC AAAGATGAAA TTAATCAAAC ACGTGCAGAT
TTCACCTTTG ACGACGGCGG CTCTACAACG CTCGCCGCTG GCGTAATGTT TACCGATCAA
ACCAAAACTA TCTCTAACAT TTCTAACAAC CTTTCGTGGG ATGATTTTGC CTGGGATACT
GCCAGTGGCT ACGGCCAACA AGATGTAAAC GATGCAGACT ACACATGGGT AGCACTAGAT
AGCGGGTTTA TGGATCAATT TAGCGGTAGC GCAGATTTAC GTGCATTGAA CCTCGGCAAT
TATTCATTCG ACCCTAACGC AGTGCGTGCA GCGTGGCTTG CCGATGCGGG CGCGCCTGCA
GACCACTTCG AGCCTACATT TCAAAACTCA TCGTTTATTA TTAACGAAAA AACCACCGCT
GCTTATTTTG AGTTAACCAC TGCCACCGAT TTTGCAGGCA AAGATTTAAC GTTAGTTGCT
GGCGCACGCT ATGAATCCAC AGCAATAGAT TCAACCGGTG TAGAGGCTTC GCTTACCCTG
CTTACCTTCA CCGACCCAGA AGAAAACATG ACCACAACAT TTAGTGCTGA GGACTTCTTT
ACCGCAAGCG CTGGCTACGA TGTGCTCTTG CCAAACATGT CGGCCAAGTT AGCCTTAAAC
GACGATATGG TTGTACGTGT TGCCGCTTCG CGCAGCTTAA CGCGCCCATC GCTCGACAAA
ATGACACCCG TGCGCACGAT TGCAACAACA CGCCCAGGTT TACTTGCTGG CAGTGCCGGC
AGCCCCGATT TAAAACCCTT TATAGCAGAT AACTTCGACC TTTCGTTAGA GTGGTATTTA
AATGAAGTAG ATTATATTTC TGCGGGGTTT TTCTTAAAAA ACGTAAACAA TTTTATTGTA
GACGGTGTAC TAACCGAAAC AATTAACGGC GTAACAGACC CATCCACCGG CACAGACCCA
GAAGGCCCTG ACGCAGCAGA CCAACTTGCT GAGTTTGAAA TTACACGCCC AGTCAATGGT
GAAGATGCAC AGCTGCATGG TTTTGAACTT GCCGGCCAGC ATGCATTTGG CGATACCGGT
TTTGGCACTA TCGCCAACTT AACCCTAGTG TATACAGATT CCGACTACAA CGTGGATGAC
GTAAAGCAAA CATTTGCGGT TACCGGTTTA AGCCATTCAG CGAACTTAGT TGGCTACTAC
GAGAAAGGCC CCTTCCAAGC GCGTATTGCC TACAACTGGC GCGATGAGTT TTTACAGCGC
TTTGGTCAAA CCTCACAGGC AACCACCGAG CCCACTATTG TCGACGCCTA CTCGCAAATA
GATCTTTCCG CCAGTTACGA TATTTCAGAT AACGTATCTG TATTTATGGA AGGCATTAAC
ATAACCGATC AAGGCAATCG CTCTCACGGC CGCTATGCCA ACCAATTGGT AGAGGCGACC
ACTTCCGGCC CGCGTTATGC CGTAGGTGTA CGCGCACAGT TCTAG
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| Protein sequence | MRNHYTFKIK PIAIAIGIAG GSSTTVLAQN NSLEEVVVTG IRASLQQAVD IKREANGVVD
AISAEDIGKF PDTNLAESLQ RITGVSIDRS GGEGRQVSVR GMGPSFNLVL LNGRQMPSKE
SGRAFNFDEV AAEMVSGVEV YKTSSAAVQS GGIGATINIK TARPLDIGDK MAGSVKLSSD
LDAGGTTPQA SGLFSKNLDD SFGILLAASY QQRESQEDQL RVTKWNVDPD VSGVANFDNS
ANTNNHIFVP QQSAFNRRQD TRTRINGNLV LQYAPSDTLT ATADLQYSDF KIDRYAEELA
LWFSQNTAQS IVTDKNGTVV AYDQGASTID FFTKAPTSRT VNTSASLNVD WAITDAAKLS
VEHSASTSES NPDGEYNINQ SDVQIAQNWG FAVSGDLAFP VFNSDATATP SVQDPSRLRT
WVNELYSNNY KDEINQTRAD FTFDDGGSTT LAAGVMFTDQ TKTISNISNN LSWDDFAWDT
ASGYGQQDVN DADYTWVALD SGFMDQFSGS ADLRALNLGN YSFDPNAVRA AWLADAGAPA
DHFEPTFQNS SFIINEKTTA AYFELTTATD FAGKDLTLVA GARYESTAID STGVEASLTL
LTFTDPEENM TTTFSAEDFF TASAGYDVLL PNMSAKLALN DDMVVRVAAS RSLTRPSLDK
MTPVRTIATT RPGLLAGSAG SPDLKPFIAD NFDLSLEWYL NEVDYISAGF FLKNVNNFIV
DGVLTETING VTDPSTGTDP EGPDAADQLA EFEITRPVNG EDAQLHGFEL AGQHAFGDTG
FGTIANLTLV YTDSDYNVDD VKQTFAVTGL SHSANLVGYY EKGPFQARIA YNWRDEFLQR
FGQTSQATTE PTIVDAYSQI DLSASYDISD NVSVFMEGIN ITDQGNRSHG RYANQLVEAT
TSGPRYAVGV RAQF
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