| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sde_3047 |
|---|
| Symbol | |
|---|
| ID | 3967652 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Saccharophagus degradans 2-40 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007912 |
|---|
| Strand | - |
|---|
| Start bp | 3897951 |
|---|
| End bp | 3899465 |
|---|
| Gene Length | 1515 bp |
|---|
| Protein Length | 504 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 42% |
|---|
| IMG OID | 637922144 |
|---|
| Product | serine/threonine protein kinase |
|---|
| Protein accession | YP_528516 |
|---|
| Protein GI | 90022689 |
|---|
| COG category | [S] Function unknown |
|---|
| COG ID | [COG3428] Predicted membrane protein |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 25 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 6 |
|---|
| Fosmid unclonability p-value | 0.00102959 |
|---|
| Fosmid Hitchhiker | Yes |
|---|
| Fosmid clonability | hitchhiker |
|---|
| |
Sequence |
| Gene sequence | ATGAGCAATG ATTGGCAGCG GCTCTCACCC TGGGCAATTG TGTTTTTTGC CTTTCGAGGC
TTAAAGCATA TTGCCAATTT GTACCCCGCT TTTATCGGTG TGTTTATAAC TGCACAGCAT
TTTGATTTGG GGTGGGGGGC TATTGCACTT TATACCTTTT ACGCTTTTGT TGTATTGGTG
TTGGGGGCGA GCCTTTATTA TTTAAACTTT TTCTATATTC AACAAGACGA TAAGTTTTTA
ATTCGCAGCG GTATTCTGCA AAAGGATAGG CTGGAGTTAC CGTTTGCTCG AATTCAAAAT
ATAACCGTAA AGGAGCCATT TTATTTTAGG CCCTTGGGGT TAGTTATTTT GAATATGGAT
AGTGCTGGCT CTGCACAAAA AGAGGTGGGT ATTGCTGCGC TATCGTTAGC GAAAGCGGCC
ACTATAAAAG ATACTATCGA ACAATATAAT GCCGGCCGCA GTAGCGAAGG CGACATGAGC
GATACAACCG CCAATACGGA AACGGATAAG GTTGATCCAG CTACTAAAAC ATTACTTATT
ACTCGCAGTA ACGCCGATAT TATATTGCAT GGTATTACTC ATAATAGAGC TTGGTTATTG
TTGGCTTTTA TGGCTCCGTT TTTTGAGCAG ATACAAACGT TACTTTTTCA TGTGATAGAG
GCCATCGGCT TTGACTTTGC TACTTGGATA AGTAATAAAT CTGTATTTGT TATTACTATG
CTTTTTATAG TGTCTGCTTT TTTTGTGTTT TTTGTAATGA GCTTGCTATC TGTGCTCGGT
TCCATTTTAT CGCTGTATGA CTTTAAGCTA TACGCCGGTA AAAATGTGTA TCAACGCAAT
AGTGGCTTGC TGAACAAACA TGAAATTCAG GTGAAAAAAA GCCGCGTACA GGCACTGCGC
TACGTGCAAA ATTGGATGGA TAGAATAGTA GGGCGTTTGG TGCTTATTCT CGAACCATTC
AATGCCAGTA GCGGCCAGCC GGCGGCTAGC ATTATGCAGA AAATATTGGT GCCAAGTATT
AACGATACGG AATTCGATGG GTTGGCAAAG CATGTATACC CCACATTTTC TCTGCAAAAA
GATGCATTCA AGTCAATAAG TAAATATTAT TTAGTTAGAA AGCTCTATAT GGTGGTGCTG
CCGTTATTTG CCGCTACCGC TGCAGTTGCC ATTGTAAGCA AGCAATACGA GTTGCTTGTG
TTTACGCCGT TGGTGTTTTT ACTTATGCCC TTGTTCTACT GCCGCTGGCG TCGTTATGGC
TGGATGCAGT GTGACGATTA CCTTGTTGTG CGCAGTGGTT TTATCGGGGT GGAGTACTTT
ATTTTCCCTC GTTATAAAGT ACAGCAAGCA AAGGTTTATC AATCTATTTT TTTAAAGCGT
AAAAAATTGG CTAGCGTACA GTTTGTATTG GCATCGCGGG CTGCGTTTAT TCCTTTTATG
GGCGAGCAAG ATGCACATGC CTTGGCAAAC AATACTTTGT ATGAAGTAGA AATGAGCGGG
CGTTCTTGGA TGTAG
|
|---|
| Protein sequence | MSNDWQRLSP WAIVFFAFRG LKHIANLYPA FIGVFITAQH FDLGWGAIAL YTFYAFVVLV
LGASLYYLNF FYIQQDDKFL IRSGILQKDR LELPFARIQN ITVKEPFYFR PLGLVILNMD
SAGSAQKEVG IAALSLAKAA TIKDTIEQYN AGRSSEGDMS DTTANTETDK VDPATKTLLI
TRSNADIILH GITHNRAWLL LAFMAPFFEQ IQTLLFHVIE AIGFDFATWI SNKSVFVITM
LFIVSAFFVF FVMSLLSVLG SILSLYDFKL YAGKNVYQRN SGLLNKHEIQ VKKSRVQALR
YVQNWMDRIV GRLVLILEPF NASSGQPAAS IMQKILVPSI NDTEFDGLAK HVYPTFSLQK
DAFKSISKYY LVRKLYMVVL PLFAATAAVA IVSKQYELLV FTPLVFLLMP LFYCRWRRYG
WMQCDDYLVV RSGFIGVEYF IFPRYKVQQA KVYQSIFLKR KKLASVQFVL ASRAAFIPFM
GEQDAHALAN NTLYEVEMSG RSWM
|
|---|
| |