| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sde_3045 |
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| Symbol | |
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| ID | 3967650 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Saccharophagus degradans 2-40 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007912 |
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| Strand | + |
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| Start bp | 3892186 |
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| End bp | 3894822 |
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| Gene Length | 2637 bp |
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| Protein Length | 878 aa |
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| Translation table | 11 |
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| GC content | 46% |
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| IMG OID | 637922142 |
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| Product | diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) |
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| Protein accession | YP_528514 |
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| Protein GI | 90022687 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG5001] Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain |
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| TIGRFAM ID | [TIGR00229] PAS domain S-box
[TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 14 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 6 |
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| Fosmid unclonability p-value | 0.00150219 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | ATGCTACTGG ATAGACGCCA AGATGTTGAA TTGCGTGACG CAGTGTCAAG CTTGCGACAG
ATGTTATCCG TCGCTAAAGA TGCGTCTACA GCTTACCAGG ACACATTAAA AACGGCCTGT
GAGCTCACTC ACTCACCCTT CGGCTTTATA GCCAAAAGAG AAATAATCGA CGGTTCTTTA
GAACTCAAGG TTTCCCACCT TTGCCACAAC GAAGTAGAAG CCACAAGCGT AAGTGAACCC
CTTTTCCTAC CGCTCACACC CCAAGTAAAA TTAAATTTTT GCAATGGGGC ACAATTAATT
AGTCAGCAAG ACTTGACTAA GCTACAGGGG TTTTTCGAAG GGGTAGAACG ATTTAAGCAA
ATGATGGCCA TCCCCATTTC GGATGCTCAC TCTATACACG GGGTGTTATT TCTCGCCAAT
GCCCAAACGG CCTATCACAC ATCTCTTTCC ATGCGTTTAT GGCCGCTTAT AACCAATTGT
ATTTGCATTG CGCGTATTAT TGATCAGCGT AAAAACAGTA CCGATCAATC CCCCCCACAA
GATAGCAGTA CTCCAAACGA GCTATATTAC TTATTCGAAG GCGTTTGCCC CCTTAGCGTA
GTTACAGTAG ACCACCAACT AAAAATAGTC CGCATGAACC CGCGCGCCGA GGCGATATTT
GGCTACAACC AAAACCAAAT TATCGGGTCT CATATTTCTA CATTGCTACC AGAAAGATTT
ACCAACGAAC ACCATACACA AACTTTTGCC TATAACCCCC TCGCTCCACC ACAGCATACT
AGCAGCCCCA TGATTGGCCG TAGCTATAAG GGCGTGGCTA TAAATTTCGA CGTAAACAAA
CTGCAATATG TGCTAAAGGG CAAGCGCCAT CATATTCTTA TTATGCGCGA CACCACCGAA
ATAGAAATTG CGCGCGCTCA GCACGAGGAT GAGGTAGAGC GTTTTCGTAT TTTGGCGGAC
TTGGCCCCAG TAGGTATTCT GCAAGCGAAT AGCGACTGGT CTGGAATCTA CGCCAACGAC
CGTTGGTGCG AAATAGCAGG CAGGTCGATG AGCGATATTC TAGAGCTTGG CTGGCTTTCT
GCCATTCACC CCGACCACTT TCACAATGTA ATCGAACCCT TGCGCACTGC AATTAGCGAA
GGTAAGGAGT TCAAACGCGA GTGCTTGTTT TTAAAGCCTA ATAGTGAACA AACATGGGTA
GAGCTACACG CACGTCCTCA AATTTCGACA AATGGCGATA TTACTGGGTT TATAGCCACA
ATATTGGACA GTACTTTCCG CCACGAAGCA GAAGATAAAC TGCGCGAACT CGCCGAGCAC
GACCCGCTCA CAGGCTTGGC CAACCGAGCA ATGTTTCAGC ACCGGCTTGA ACACGGGCTT
TCGCGAACCC ATCGCCACGG CTCCCTCGCC CTATTGTGCT TGGATTTAGA CGGGTTTAAA
AACGTAAACG ATACTTTGGG GCATGATAGC GGCGACGAAC TACTTATAGA GGTGGCCAAA
CGTCTTACCA AATGCGTGAG AGAGGAAGAT ACTGTTGCCC GCGTCGGCGG GGACGAATTT
ATGATTTTAC TCGAAGGGTT AAAAGACGCC CAAATAGCCG CCGAGGTAAG CGAAAAGATT
TTAAACTCAC TCGAGCCGCC GTGCAGTATT AACCGTCAAG AAGTCTTTAT TAGTACAAGT
ATTGGCATAA CTTTCGCTAC CAAAGGCGAC AAAAACGACT CTAAATCGCT AATGAAACAA
GCCGATATGG CGCTTTACCG TGCAAAACAC GAAGGCCGTA ATAACTACCA ATACTACTCC
CCAGACCTTG AACGCGCATC GCAGGAACGA CTCTACTTAG GCAACAGCCT GCACCACGCG
TTACAACGCA CGGAGTTCCA AGTTTTCTAC CAATTTAAAT CCAGCCTTTC CACCCATAAA
GTAACAGGGT TCGAAGCCGT ATTACGCTGG GAGCACCCAC GCCGCGGCCA ATTACAACCC
GATCAGTTTA TTCCTATTTT AGATGAAAGC GGTTTGATCG TACCGGTAAG TCGCTGGCTA
ACCCATACAA GCTTTATGCA ACACGCCAAA TGGAAGGCGA AAGGGCTAAT AGAGAAGGAT
GCCAAAATAG CAGTGAATGT ATCTCCTCGC TTATTGCGCG ACCCCTACTT TATTCGAGGC
TTGGCAAACT CGATACAAGA TTCAAAAATT GACCCAACTA GCGTGATCAT AGAAATAACT
GAAACAGCCC TTCTCGAGCA CTCAGAGCAA ACTACCGATG CCCTGAACGG GCTAAAAAGA
ATAGGAGTGG CAATTTCCCT CGACGACTTC GGCACCGGCT TTTCATCGCT AACCCATCTT
AAGCGCTACC CTATAGATCA AATTAAAATT GATCGATCAT TTGTACAAAA TCTATTAAAA
GATTCAGGCG ACAAAGCAAT AGTCAAAGCC GTAATAGTGC TCGCCAAATC GTTAAAGCTT
ACAGTTGTTG CAGAGGGCGT AGAAGATAAA GCCACACTCG ATTATTTAGC ATCGCTAAAC
TGCGACGAAT ACCAAGGGTT CTACCTAAAT AAGCCACAAC CTGCAGAAGA GATTGAAAAT
TTACTGCTTA ACGGCCTACA ATTAGCCCCC TCTCAAGCAG ATAACTCATC AAAATAA
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| Protein sequence | MLLDRRQDVE LRDAVSSLRQ MLSVAKDAST AYQDTLKTAC ELTHSPFGFI AKREIIDGSL
ELKVSHLCHN EVEATSVSEP LFLPLTPQVK LNFCNGAQLI SQQDLTKLQG FFEGVERFKQ
MMAIPISDAH SIHGVLFLAN AQTAYHTSLS MRLWPLITNC ICIARIIDQR KNSTDQSPPQ
DSSTPNELYY LFEGVCPLSV VTVDHQLKIV RMNPRAEAIF GYNQNQIIGS HISTLLPERF
TNEHHTQTFA YNPLAPPQHT SSPMIGRSYK GVAINFDVNK LQYVLKGKRH HILIMRDTTE
IEIARAQHED EVERFRILAD LAPVGILQAN SDWSGIYAND RWCEIAGRSM SDILELGWLS
AIHPDHFHNV IEPLRTAISE GKEFKRECLF LKPNSEQTWV ELHARPQIST NGDITGFIAT
ILDSTFRHEA EDKLRELAEH DPLTGLANRA MFQHRLEHGL SRTHRHGSLA LLCLDLDGFK
NVNDTLGHDS GDELLIEVAK RLTKCVREED TVARVGGDEF MILLEGLKDA QIAAEVSEKI
LNSLEPPCSI NRQEVFISTS IGITFATKGD KNDSKSLMKQ ADMALYRAKH EGRNNYQYYS
PDLERASQER LYLGNSLHHA LQRTEFQVFY QFKSSLSTHK VTGFEAVLRW EHPRRGQLQP
DQFIPILDES GLIVPVSRWL THTSFMQHAK WKAKGLIEKD AKIAVNVSPR LLRDPYFIRG
LANSIQDSKI DPTSVIIEIT ETALLEHSEQ TTDALNGLKR IGVAISLDDF GTGFSSLTHL
KRYPIDQIKI DRSFVQNLLK DSGDKAIVKA VIVLAKSLKL TVVAEGVEDK ATLDYLASLN
CDEYQGFYLN KPQPAEEIEN LLLNGLQLAP SQADNSSK
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