| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sde_3035 |
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| Symbol | |
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| ID | 3967699 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Saccharophagus degradans 2-40 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007912 |
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| Strand | + |
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| Start bp | 3877481 |
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| End bp | 3880159 |
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| Gene Length | 2679 bp |
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| Protein Length | 892 aa |
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| Translation table | 11 |
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| GC content | 46% |
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| IMG OID | 637922132 |
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| Product | TonB-dependent receptor |
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| Protein accession | YP_528504 |
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| Protein GI | 90022677 |
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| COG category | [P] Inorganic ion transport and metabolism |
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| COG ID | [COG1629] Outer membrane receptor proteins, mostly Fe transport |
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| TIGRFAM ID | [TIGR01782] TonB-dependent receptor |
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Plasmid Coverage information |
| Num covering plasmid clones | 0 |
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| Plasmid unclonability p-value | 0.00000163798 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | unclonable |
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Fosmid Coverage information |
| Num covering fosmid clones | 2 |
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| Fosmid unclonability p-value | 0.00000214604 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | decreased coverage |
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Sequence |
| Gene sequence | ATGAGAAATA AACTACGCAG TGCTATTAAG GCCATAAACT ACGAATCAAT CACTACCGCA
GCTGTTTTGG GGATGGCTGC CCCAGTGTTC GCACAGGATG CAGGACCGAT CGAAGAGGTT
ACCGTTACTG GTATTCGCAG CTCTTTGACT CAATCCATAG ACAAAAAACG CGACGCTAAT
GCTGTTGTTG ACGCAATTAC GGCAGAAGAC ATAGGCAAGT TCCCAGATAA AAACGTTGCT
GACTCCCTAT CGCGCATCAC CGGTATTGGT GTGAGCCGTG AATTTGGTGA AGGTGAAAAA
ATTACCGTTC GCGGTGCTAG CCCTTCAACT AACCGCACCT TGTTAAATGG TCAATCAGTA
GCGTCTGCAG ACTGGTTTAT CTTAGATGTG CCATCACGCA GCTTTAACTA CACCTTACTT
CCTTCAGCGC TAGTTTCTAG CTTAGAAGTA TATAAGTCGC CTGTAGCCAG CATGGATGAA
GGTTCTCTAG GTGGTACTGT TGTACTCACT ACTCGCCGCC CTCTAGACCT TCCTGCGAAT
GCTGTTTCAG TAAAAGTAGA AGGCCAATAT TCAGAAACCT CTGGCGAAAC CGATCCACAA
CTTTCTGCCA TGTACTCCTG GAAGAATGAC GACGAAACAA TTGGCTTGTT AGTTTCTGGT
GTAAGCCAAC AACGTAAAGT TGTGCGTGAA GGTGTAGAGA TTTTAGGCTG GCGTGACACT
GGCGGCGTAA AAGTGCCAAG CCATATTGGT GTACCGCGCT TTGAACAAGA ACGTGACCGT
CAAACCGTTT TTGCCAGCGC CCAATTTGCT CCAAGCGAGA ATTTAGATTT CACCTTAAAT
GTTTTGAAAT CAAAAATGGA CTCGAACAAC CACAACCAAA ACTGGTTGAT TTTCCCAAAC
AATGAGGCCA CCGAAGCATT AACGGACCCA ACTGTTTGGA CAAGCAGCAC CGTAGAAGAC
GGCAACTTGG TTGCGGCGAG CGTTGCCACT GGCGGCTCTA CCGAATTCGA CTTTATTAAC
CGTCGCTCTT CAACCGAAAC ACAATCTGTA GATTTAGACA TCAACTATTT AAGCGATTCA
CTGAATGTGC ACGCACAAAT AGGTAGCACA GATGCCAAAG GCGGTACCTA TCGCGAAGCG
TCTTACTCTG CTCTTCCAAT TAACGATATA GGTTACTCGT TCGATTTACG TGGCACGCCA
GAGCTTGAGA CGACTGTAGA CTCATCTGAC CCAAGCGCAT TTGCACCTGG CTGGATTTGG
GGTGGTAAAA AACCAACTAC AGATAAAGAA ACCTACGCTC AAGTAGATTT TGAATTACCA
ATTGAAGCAG GCGTATTTAC CGCAATTAAA ACCGGTATTA AATTGCGCGA CGCAGAGCGC
ACTCAAGAGC GTGCAGTGTT CAGTTGGCAC GGCCCGAACA CCATCGACGA AGACAATGTA
TCTGGCAGCT ACTTAGATCA CGTATTTGCT ACTTGTACCA CCTTTGAGGT ATGTGGTTTA
GGTGTAGGCA CACCAGAAAG CATCGACGTA TTGGCTTCTG GCAACATGAC AGAGCAAATG
TACCACGATC AAGCAGCGTT CGAAGAAATT GCATTTGTTG GCTTAGACGG TGTACCCGCA
GATTACGCTG TGAGCTTAGA GCTAGCGCAA AACTGGGAAG TATCTGAAAA AATCAATGCG
CTTTATGTGC AAGGTGATTT TGAAGGCGAC GGTTTCCGCG GCAACATGGG TGTTCGCTAC
GTATCAACCA AGCAAACTTC TGGTGGTTAT GAGTTCTCTG ACGATTCTTG GGGCTTTTAC
ACTATCGACC GCGAATGGTT AACACCATCA AGCTTAGAGT GGGTAACCAC AGACAATAGC
TACAGCGAAA TATTGCCAAG CTTTAACGTT GCGTTTGATT TAAATGCAGA TCAAATCTTA
CGCTTCAGCT CAGCGCGTGT TATGTCTCGT CAAAACTGGA ACGACATTTC TGCAAGCGAA
TCGTTCGGCT CTTTGAACCA AGCAGCACCT GCAGGTACGC GCAGCAACCC ATTGCTTAAC
CCACAAATTG CAGATCAGTT TGATATTTCT TGGGAATGGT ACTTCGACGA TGCGTCACTG
TTGTCTGCTA CCTACTTCTT TAAAGATATT AAGAGCTACA GATCTTATGT ATTTGACACA
TCACCACGCT ACAACGAAGA AACTGAAGAG TTCGTAGATG TAACCTTCCA ACAGCCTGTA
AACGGCCTTG GTGGAACAAC AGACGGCTTG GAACTTTCTT ATCAGCAAGG TTTTGGCGAC
TTTGGTGTTG TAGCCAACTA CACCTACACC AACGCAACCA ACGAGCAAGA GCGTGACGAA
ACGTCTCCAG GTTCAGGCCT CGTTGAAGGC ACATCAGACC ACATGATGAA CCTCACCGGC
TACTACGAAA ACGACGTGCT AAGCGCGCGC TTAATGTATA ACTACCGCAC CGAATGGTAC
AAAGGTTTGC ATTTTAACGG CGATGAGCTG TGGAACGACG CTTTCGGTCA ATGGGACGCG
AGCTTCAGCT ACAACGTTAC CGATAACGTA TCGCTCTCTT TAGAAGCTAT TAACCTGCTA
AATGAAGAAG TCATTGAGTA CAACACCGAT AAAGCACGCG TTATGTCGCT TTACCAAAAC
GGTCGCCGTA TCGTTGCCGG TGTATCCATT AACTTCTAA
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| Protein sequence | MRNKLRSAIK AINYESITTA AVLGMAAPVF AQDAGPIEEV TVTGIRSSLT QSIDKKRDAN
AVVDAITAED IGKFPDKNVA DSLSRITGIG VSREFGEGEK ITVRGASPST NRTLLNGQSV
ASADWFILDV PSRSFNYTLL PSALVSSLEV YKSPVASMDE GSLGGTVVLT TRRPLDLPAN
AVSVKVEGQY SETSGETDPQ LSAMYSWKND DETIGLLVSG VSQQRKVVRE GVEILGWRDT
GGVKVPSHIG VPRFEQERDR QTVFASAQFA PSENLDFTLN VLKSKMDSNN HNQNWLIFPN
NEATEALTDP TVWTSSTVED GNLVAASVAT GGSTEFDFIN RRSSTETQSV DLDINYLSDS
LNVHAQIGST DAKGGTYREA SYSALPINDI GYSFDLRGTP ELETTVDSSD PSAFAPGWIW
GGKKPTTDKE TYAQVDFELP IEAGVFTAIK TGIKLRDAER TQERAVFSWH GPNTIDEDNV
SGSYLDHVFA TCTTFEVCGL GVGTPESIDV LASGNMTEQM YHDQAAFEEI AFVGLDGVPA
DYAVSLELAQ NWEVSEKINA LYVQGDFEGD GFRGNMGVRY VSTKQTSGGY EFSDDSWGFY
TIDREWLTPS SLEWVTTDNS YSEILPSFNV AFDLNADQIL RFSSARVMSR QNWNDISASE
SFGSLNQAAP AGTRSNPLLN PQIADQFDIS WEWYFDDASL LSATYFFKDI KSYRSYVFDT
SPRYNEETEE FVDVTFQQPV NGLGGTTDGL ELSYQQGFGD FGVVANYTYT NATNEQERDE
TSPGSGLVEG TSDHMMNLTG YYENDVLSAR LMYNYRTEWY KGLHFNGDEL WNDAFGQWDA
SFSYNVTDNV SLSLEAINLL NEEVIEYNTD KARVMSLYQN GRRIVAGVSI NF
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