| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sde_3003 |
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| Symbol | |
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| ID | 3967764 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Saccharophagus degradans 2-40 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007912 |
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| Strand | + |
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| Start bp | 3828980 |
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| End bp | 3832483 |
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| Gene Length | 3504 bp |
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| Protein Length | 1167 aa |
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| Translation table | 11 |
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| GC content | 50% |
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| IMG OID | 637922100 |
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| Product | hypothetical protein |
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| Protein accession | YP_528472 |
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| Protein GI | 90022645 |
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| COG category | [G] Carbohydrate transport and metabolism |
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| COG ID | [COG2730] Endoglucanase |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 6 |
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| Plasmid unclonability p-value | 0.25795 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 5 |
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| Fosmid unclonability p-value | 0.000812606 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | ATGACAATTA AACGTTGGCC GTTCGACCGA AAAGGCCCAC CTAAAAAACC TAACGCTAAA
AAATTACTCG CAAGCTTAGC GGCTGCACTA AGCTTAACCG CCATGCAAAG CACTGCAGCG
GTAGAGCCAT TACAAACCAG CGGCAATCAA ATTCTTGTTG GCAACCAAGC CAAAGCCCTT
GGCGGCCACA GCTTGTTTTG GCATAACGTG CCGGCAGCAG GCAGCTTATA CAATGCAGAT
ACAGTAAGCA GGCTTAAGAA TGATTGGAAC TCCAAGGTTA TTCGGGCCGC AATTGGGGTT
GAAGTACCTT TCAATTCAGA AAACACCTAC ATAGGCAATA AGGGCAGCTC GCTGGCCGCA
ATAGACCGCG TAGTTAATGC CGCTGTTGCC AACGATATGT ATGTGATTAT CGATTTTCAT
ACTCACCATG CAGATCAAGT AGAAAACGTT GCCCACGACT TTTTCAACGA AGTTTCTAGC
CGTTACGGTC ATTTAAACAA TGTTATTTAT GAAGTATTTA ACGAGCCAGA ATGGTGTGGC
GAGCACGGTC GGTGGGCATC TACCATTAAG CCCTACGCCG AGCGCGTTAT CCAAACCATT
CGCAACAATG ACCCAGACAA CCTAGTAATA GTAGGCACTA CCTGTTTCTC GCAAGATGTA
GATGTAGCCG CAGCCGACCC CATTAACGAT GTAAACGTGG CCTATACGCT ACACTTTTAC
GCAGCCACCC CTGCCCACCA GCAACCCTTG CGCGACAAGG CCCAAACCGC GCTCGACCGC
GGCGCGCCAC TATTTGTAAC CGAATGGGGT ACAACCACAT TTACAGGTGA TGGTTTTGTA
GATGAGGCGC AAACGCGCAC ATGGATTAAC TGGTTAAACG AACGCGGTAT TAGCCACGTT
AACTGGTCGG CGTCTACCCA GCCAGAAAGC TCAGCTATAT GGAATGGCGA CATGACCTAC
AAGCATTCGG GCTTATTGGT TGGCGAACTG GTGCAACAAA CAAATGGCAC AACCACGCCA
CCAACCGGTG AAATAAGTGG CCCGTGCGAT TTACATTTTG TACCTGCCAA AGCCGAGGCT
GAAAGCTTCT GTACCGCCAA AGGCATTCAA TTTGAAACCA CCACCGACAC GGGCGGCGGC
CAAAACATGG GCTGGCTAGA TGCCGGCGAC TGGGTAACTT TTGATGTAGA TGTACCTGCT
AGCGGCCAAT ATTTAATAGA TTACCGCGTA GCATCAGAGC TAGGTGATGG TCGGTTCCGC
ACCGAAGCCG CCAACGGCAC TGCCCTTGGC ACAATATCTG TACCCAATAC CGGCGGCTGG
CAGAATTGGC AAACGCACAC ACACACAGTG CAACTCTCGC AAGGCACACA AACCGTTAAA
CTAGTTGCCG AAACTGGTGG CTGGAACTTA AATTGGTTTG AAGTGCGCGC AGGTGAGGTG
TGCGAAGGCG CTGACTGCCC ATGTGAAGGA GCCGAATGCC CTTGCCCAGA TTGCAACGGC
ACACCGGTTA AGTTTGAGGC AGAAACGTTT GTGGCTATGC AAGGCGTGCA GCTAGAAAAC
ACATCCGATG TGGGCGGCGG CCAAAACGTT GGCTACATTG ATAGCGGCGA CTGGATAACT
TACAACGGGG CCTTGCCCGC AAGTGCAGAC AACCGCTATG TAGTGTCTTA TAGAGTAGCG
CGTCAACCTA GCGGCAATGC CAAATTTAAA ATAGAACAGC CAGGTGGAGC AGCGGTATAT
GGCGAAATTT CGGTGCCCAG CACCGGCGGC TGGCAAACAT GGACAACCAT TAGCCACACC
ATAACAATTC CCGCTAACGC AAACGGCTTT GCACTAGCAG CAATAGATGG CGGTTGGAAT
ATAAACTGGA TAGAAATAAA ACCGGCGACC ACTCAACCAC CCGAGCCAAT CAACCCGTTA
AAACTTCAAG CTGAAGATTA CATCAACTTT AACGACACCA CCCCCGGTAA CGAAGGCGGT
GCACACAGAA GCGATGATGT AGATATTCAA GCAACTACCG ATACCGGTGG CGGTTTTAAT
GTTGGCTGGG TAGACGCTGG CGAATGGCTA GAGTATGAGT TCTTTTTAGA GTCTCCTGAT
TTTTATGCAG CTGATGTACG GGTTGCTTCA GACCAAACTG GCGGCGCACT GCAACTACAA
ATAGATGGCC AAAACGTTGG CCAAGCCATT ACCGTTGGCA ACACCGGTGG CTGGCAAGCG
TGGACAACCA AAAACACACT CATTGGCGAC CTAAGTGCAG GCACCCACAC GTTGCGTGTA
TACGCGCAAA GCGGCCCATT AAATTTAAAC TGGGTAGAGC TAAAGCGTAC AACGCCCGCA
CCAGCCACTT CGTGTTTTAA TATTGCCGAA GACCGCTTAA ACGTTCACCT AGATGCGCAC
TGTACTGCAG GCAGCAACCT GCAATACAAT TGGGATTTTG GTGACGGCAA CAGCGCAACC
GGCGTAGCCA CTAGCCACAG CTACTACACT AGCGGCACTT ACACCATTAC CTTAACCGTT
AGTGATACCC GCACCACAGA CACCTCTAGC CAACAGGTAA CGGTAGATTT TTCTGCCCCT
GCAGGCCCTG TGGATTTTTA CGGCGAACTA ATGGTGAATG GCAACCGCAT TCACGGCGAA
AAAACCGGCG AACCCGCACA AGTACGCGGC ATGAGCTTTT TTTGGAGCAA CACCGGTTGG
GGCCAAGAAA AATGGTGGAA CGCCAGCACC GTGGACCGCA TGGTTGATGA GTTCAAAGTA
GAACTTGTGC GCGGCGCAAT GGGCACTGAT GAAGGCGGCG GTTATTTACA CGACGCGTCT
AATAAGGCTC GCTTACAAGC AGTTGTTGAA CAAGCCATTG CACGCAATGT GTATGTAATT
ATCGACTGGC ACACCCACCA TGCCGAAGAT AACATTGCCG AAGCCATTAC ATTCTTTAGC
GAAATGGCGC AGCTTTATGG CCACCACGAC AACGTGATTT TCGAGATTTA CAACGAGCCA
TTAAACACCA CAAGCTGGGG CACTATTAAG CACTACGCTG AACAAGTTAT TCCTGCTATT
CGCGCTCATT CCGATAATTT AATTGTTGTG GGCACGCGCA CCTGGTCGCA AAACGTAGAC
GAAGCCGCGT TCGATAAAAT TAACGACAGC AACACCGCCT ACGCCCTGCA CTTTTATGTT
GGCTCGCACG GCAACCACGT TCGCAACCTA GCACAAACCG CACTAAACAA CGGCGCGGCT
ATTTTTGCTA GCGAATGGGG AATTTGGCCA AACAACAACT ACGATGGCAT GAACGCCGAC
GATTGGATGA ACTTTTTAGA CCAAAACAAA ATATCTTGGG CTAACTGGGC CATATCCGAC
AAAGTAGACC CCAACACAGG CCAACTAGAA CCACCCAGCA TGTTCAACCC AGACGGCAGC
CTAAGCAGTA ATGGTCAATA TGTAGTGAAC AAACTAAATG AATACGCAGC ACAAGCACCG
TGGAGGGAGG CAATCGCTAA TTGA
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| Protein sequence | MTIKRWPFDR KGPPKKPNAK KLLASLAAAL SLTAMQSTAA VEPLQTSGNQ ILVGNQAKAL
GGHSLFWHNV PAAGSLYNAD TVSRLKNDWN SKVIRAAIGV EVPFNSENTY IGNKGSSLAA
IDRVVNAAVA NDMYVIIDFH THHADQVENV AHDFFNEVSS RYGHLNNVIY EVFNEPEWCG
EHGRWASTIK PYAERVIQTI RNNDPDNLVI VGTTCFSQDV DVAAADPIND VNVAYTLHFY
AATPAHQQPL RDKAQTALDR GAPLFVTEWG TTTFTGDGFV DEAQTRTWIN WLNERGISHV
NWSASTQPES SAIWNGDMTY KHSGLLVGEL VQQTNGTTTP PTGEISGPCD LHFVPAKAEA
ESFCTAKGIQ FETTTDTGGG QNMGWLDAGD WVTFDVDVPA SGQYLIDYRV ASELGDGRFR
TEAANGTALG TISVPNTGGW QNWQTHTHTV QLSQGTQTVK LVAETGGWNL NWFEVRAGEV
CEGADCPCEG AECPCPDCNG TPVKFEAETF VAMQGVQLEN TSDVGGGQNV GYIDSGDWIT
YNGALPASAD NRYVVSYRVA RQPSGNAKFK IEQPGGAAVY GEISVPSTGG WQTWTTISHT
ITIPANANGF ALAAIDGGWN INWIEIKPAT TQPPEPINPL KLQAEDYINF NDTTPGNEGG
AHRSDDVDIQ ATTDTGGGFN VGWVDAGEWL EYEFFLESPD FYAADVRVAS DQTGGALQLQ
IDGQNVGQAI TVGNTGGWQA WTTKNTLIGD LSAGTHTLRV YAQSGPLNLN WVELKRTTPA
PATSCFNIAE DRLNVHLDAH CTAGSNLQYN WDFGDGNSAT GVATSHSYYT SGTYTITLTV
SDTRTTDTSS QQVTVDFSAP AGPVDFYGEL MVNGNRIHGE KTGEPAQVRG MSFFWSNTGW
GQEKWWNAST VDRMVDEFKV ELVRGAMGTD EGGGYLHDAS NKARLQAVVE QAIARNVYVI
IDWHTHHAED NIAEAITFFS EMAQLYGHHD NVIFEIYNEP LNTTSWGTIK HYAEQVIPAI
RAHSDNLIVV GTRTWSQNVD EAAFDKINDS NTAYALHFYV GSHGNHVRNL AQTALNNGAA
IFASEWGIWP NNNYDGMNAD DWMNFLDQNK ISWANWAISD KVDPNTGQLE PPSMFNPDGS
LSSNGQYVVN KLNEYAAQAP WREAIAN
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