| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sde_2998 |
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| Symbol | |
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| ID | 3967759 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Saccharophagus degradans 2-40 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007912 |
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| Strand | - |
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| Start bp | 3820211 |
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| End bp | 3822604 |
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| Gene Length | 2394 bp |
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| Protein Length | 797 aa |
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| Translation table | 11 |
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| GC content | 49% |
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| IMG OID | 637922095 |
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| Product | helix-turn-helix, AraC type |
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| Protein accession | YP_528467 |
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| Protein GI | 90022640 |
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| COG category | [P] Inorganic ion transport and metabolism |
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| COG ID | [COG1629] Outer membrane receptor proteins, mostly Fe transport |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 11 |
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| Plasmid unclonability p-value | 0.167643 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 3 |
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| Fosmid unclonability p-value | 0.0000224907 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | ATGAGTATTA AGCGTCCCTT ATCTTTAGCT ATTGGTTGCA TTGTTGCCGC CAGTGGCGCT
GCCCAAACCT TTGCGCAAGA GGCAGATAAC ACTACTCGCG CACTAGAGGA AGTGGTGGTA
ACCGCAGAGC GCCGTGCAGC AGACCTGCAA AGCACGCCAA TTGCGGTAAG TGTGTTCTCG
CAAAAAGCAT TGGTTGAAAA CGACATTACC GATGTGACTG ACTTAAGCGG TTTTGCCCCT
AACCTTGTGG TGTCGGGCCA AGAAGAGCAG TCGGACATTA AAATCTTTAT TCGTGGTGTG
GGCACCAACA ACCCAACTGA AACCGGTGAC CAAGGCGTGG GTGTGTATGT AGATGGCGTT
TATGCTGCAC GTGCACAGGG CGCGTTGGCG TTGATGTACG ACTTAGAAAA CGTACAGGTT
TTGCGCGGTC CACAGGGTAC TTTGTTTGGT CGTAACAACA CCGGTGGTGC GGTATTGCTA
CAAACTAAGC GCCCGGGCAA CGAGTTTGAA GCGGATATGA GTGTGACTTA TGGATCGTTT
AACCGTCAGC AAATATCTGC TGGGTTTACT TTGCCTGTGT TAGATAACCT CTCTTTCCGT
ATTGCAGGTA TTTCCGATCA AGACGACGGT TGGGTGAAAG CAGTAAGCAC AGACCCGCGC
GGTACCGAGC ACAACTTCAG CGGTATAGAT ATTGGTCGGA GTGCTAACGT AGGTCAGCGC
TTGAACTATT CCGATGTGCG TTCAGCGCGT GTTACTGGTT TGTGGGATAT TCGCGACAAC
CTCTCTTGGG TGCTTTCTTA CGAAACTTTC ACCGATCAAG GTGTAGGCGG TTTGTTGCTA
AACCCTGTTT TGGTTAAAGA GGGTAAGTAC GAAGCCTTTA TCGATTCGCC CGTATCTAAA
AAAATGAAGA GTGACGTGTT GCGCTCTACG GTGAATTTTG ACATCACCGA TGGCATTAAC
ATGCAGTACA TTTTCGGTGG CAGTGATTTG CACCGCGAGC AGGTGGTGGA TCAAGACGCT
GGCGTTATTT CTCGCTTCCA AGAAGGCCGT ACGGAGTATC AAGATTCTGT TGCCAATAGC
CATGAATTAA AAATTCAAAA TATCGATAGC GACAAGCTTG AGTGGACAGT AGGTGCCTAC
TTCTTCACCG AAGAAACCGG CATTCGTTTT GATTTCGACG GCCAAGGTAG CTGGTTGCAA
GGTGGTAACT CCTTCATACA GCCTGCGCGT GGTGCAGAGT CTGCAGCTAT TTATGCCCAA
GTAAAATACA GGGTAACTGA TGCATTAACA CTTACTGGTG GTATTCGTTA TACCGACGAT
TTGAAATACG ATCGTGGCGG TCGCAACGTT CAGGATTGCG AAAATGAATT TATTCGTCCA
ACGCTTGGCG GTTCTGCCCT TTCTGTGTTT GAAGATTTCC TTGATAACCG CACCGGTGCC
GAAGGCGCAG ACGGCTTAGA TGATTTTACT GGCAAAGAGC GCGTACGCGG CCAATGTGCT
GCAACACTGC GCAACGATGT TGAAGCTGAA TCTACGCAAA CAACTTATCT AGCGCGTGCA
GATTACGAGT GGGGCGACTC AATGGTATAC GCCAGTGTGG CAACAGGTTA CCGCGCGGGT
GTTATTCAAG ATGGTGGGCA ATCTACCGAC CCAGAAAACA GCACCAACTA CGAGTTGGGT
TACAAGTTAG ATACCGGCGC CTTCCGTTGG AACTCGGCGG CATTCTTTAT GACCTACGAA
GACCTTATTC GCTCTGGTTT TGACGAAGAC CTAAACCAAA TTGTTAACTC CAACGTGGCT
GGTGCAGAAA TTGGTGGTTT GGAAACTGAA ATTACGTGGC GTGTAGGCCA AGGTGTTTTC
TCGCTTGCAG GTGCATACTT ACATGCTGAA TACACTGATT ACATTGTAGA TAGTGCGGGC
TTTGGCACTA ACAACACGCC GGTGTTGGAT GAAAACGGCG GTGAAACAGG CTTCTATGAT
TTGGCCGGTA ATCGCTTGCC ACAAGCGCCA GAGTATTCTG TGAATGCTTC CTTCCGTTGG
GATTTTGATA CGTCGTTAGG TGTAATTACG CCACGTATTA ACGTGATGTA TTCCGACGAA
GTATTTTTCC GCGATCAAAA CGAAAACCGC TCACCTATCA ACAACATGAT TAACGATGTT
GAACAAACGG GCTTTTATTA CGGCAACCCT GCAGGGCAAG AGGCCTACGC CAAAGTTAAC
TTAGGTGTGA CCTTCGACCC AGGCAGCGAC TGGACTGTTG ATTTGTTTAT CAACAACGCT
ACCGACGAAA TGACTCAATC TAGCGCATCA GTAGATAACG GTACAGCGGA AGGTTTCCCT
GGTCGATTCT CTGCACCGCG CACCATGGGT GTTCGTTTTA ACGCGCAGTT CTAA
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| Protein sequence | MSIKRPLSLA IGCIVAASGA AQTFAQEADN TTRALEEVVV TAERRAADLQ STPIAVSVFS
QKALVENDIT DVTDLSGFAP NLVVSGQEEQ SDIKIFIRGV GTNNPTETGD QGVGVYVDGV
YAARAQGALA LMYDLENVQV LRGPQGTLFG RNNTGGAVLL QTKRPGNEFE ADMSVTYGSF
NRQQISAGFT LPVLDNLSFR IAGISDQDDG WVKAVSTDPR GTEHNFSGID IGRSANVGQR
LNYSDVRSAR VTGLWDIRDN LSWVLSYETF TDQGVGGLLL NPVLVKEGKY EAFIDSPVSK
KMKSDVLRST VNFDITDGIN MQYIFGGSDL HREQVVDQDA GVISRFQEGR TEYQDSVANS
HELKIQNIDS DKLEWTVGAY FFTEETGIRF DFDGQGSWLQ GGNSFIQPAR GAESAAIYAQ
VKYRVTDALT LTGGIRYTDD LKYDRGGRNV QDCENEFIRP TLGGSALSVF EDFLDNRTGA
EGADGLDDFT GKERVRGQCA ATLRNDVEAE STQTTYLARA DYEWGDSMVY ASVATGYRAG
VIQDGGQSTD PENSTNYELG YKLDTGAFRW NSAAFFMTYE DLIRSGFDED LNQIVNSNVA
GAEIGGLETE ITWRVGQGVF SLAGAYLHAE YTDYIVDSAG FGTNNTPVLD ENGGETGFYD
LAGNRLPQAP EYSVNASFRW DFDTSLGVIT PRINVMYSDE VFFRDQNENR SPINNMINDV
EQTGFYYGNP AGQEAYAKVN LGVTFDPGSD WTVDLFINNA TDEMTQSSAS VDNGTAEGFP
GRFSAPRTMG VRFNAQF
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