| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sde_2993 |
|---|
| Symbol | |
|---|
| ID | 3967754 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Saccharophagus degradans 2-40 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007912 |
|---|
| Strand | - |
|---|
| Start bp | 3808643 |
|---|
| End bp | 3811234 |
|---|
| Gene Length | 2592 bp |
|---|
| Protein Length | 863 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 48% |
|---|
| IMG OID | 637922090 |
|---|
| Product | endoglucanase-like |
|---|
| Protein accession | YP_528462 |
|---|
| Protein GI | 90022635 |
|---|
| COG category | [G] Carbohydrate transport and metabolism |
|---|
| COG ID | [COG2730] Endoglucanase |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 7 |
|---|
| Plasmid unclonability p-value | 0.0380373 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 1 |
|---|
| Fosmid unclonability p-value | 0.000000401461 |
|---|
| Fosmid Hitchhiker | Yes |
|---|
| Fosmid clonability | hitchhiker |
|---|
| |
Sequence |
| Gene sequence | ATGAAGCAAT CACACCACAA TACCAAGGGT AAGCTTGGTC TAGGCAGGGC GCTGTTGTGC
GGCCTAATGC TTAGTGTCAT GTTGGGCTCT TCTGCCCACG CACAATTTGT TCACACAGAC
GGAACCAGAA TTCTTGATGA AAACGGAGAA GAGCTAAACT TTAACGGCAT CAACCTAGGT
AACTGGTTGT TATGGGAAGG TTACCTGATG ATGGGCGATT TTAATTATCG CACTCACACC
CAGTTTTTAA ATTCACTTAC CGATGCTTTC GGTAGCGCCG CTAAAGCTGC AGAGTTTGAG
CACCAATGGC GATTGAATTA TGTAGATGAG CAAGCCATCG CCGATTTAAG CGCGCTTGGC
TTTAACTCGG TACGTGTGCC ATTTCATTAC AATATGTTTT GGGAAAATGG CCAGTTAAGC
AATCACGGTT TTCAATATTT CGATCGCGTA ATTGAGTGGT GTCGCACTTA CAATATGTAT
GTGTTGCTGG ACATGCACGC AGCGCCGGGG TACCAAAACC CTGGGGATCA CGCAGACAAT
GTCGATTCGA ATGCGAGCCA GCCGCGCGAT ACGGTAAAAT TTTGGGATGG CAATAATGTA
CAAATTGCCG CTACCGTTTG GCGTCATATT GCTAACCGCT ATAAAGATGA GCCTGTAGTT
TGGGGTTACG ATTTAATTAA CGAGCCAGTA CCGCAGCCAA CTCGCGAGTT TGAATTGCTT
AGCTCTATGG TAACAATGCG CAACGCCATT CGCGAAGTTG ATAATAACCA TACCATTGTG
GTTGAAGGTA GCTGGTGGAG TTCCGATCTA ACTAAAATAG ATTGGACTGA CCCAGAAGTA
CAAGCGGCTT CCGGAGTTTA TTCCCAGTGG GATGACAACT TGGTGTATCA GCTGCATCAC
TACGGGCCGC TATCTGACAC TGTGGGTCGA GATGCGATTA CCGACAACCT CAATATCCCG
CTTATTATTG GTGAGTACGG CGAAACCGAC AACGGTAACT TAGCGGCAAT GACCGATTGG
GCTAAGCAAA ATTTGTCGGG GTATTTTCCT TGGTCGTTCA AAAAAATGTC GCACGACAAA
ACCCTTTGGA CGATTCCACC AAACGCGGCC TACAATCAAG TAAAAGCCTA TATAAATAAT
GGTGGTACAC CGCCAACGCA TTTGTACGCT GATATGATTG CGTTTGCACA AAATAATGTG
CGCAATGGTC ATAGCAGTCA TCAATGGCAC CAAGGTTTTT ACGATGCAAT TAACCCGGGC
AATACGCCAC CACCACCGCC TCCGCCCCCA CCACCCGCAC CAACGTGTGA TGACAGTAAC
GCGCAGACAT TCACTTTGCC CAGCCGCGTT CAAGCTGAAG ATCACTGCGC AAGCAGTGGT
ATTCAACAAG AAAGCACCGG CGATATTGAT GGCAACCAAA ACATTGGCTG GATAGATGCA
GGCGATTGGG CCGAATACAA CGTTACGCTA AATACAGCAG GTGAGTACAC TTTTGCAGCG
CGGGTTGCGG CGAATGCTAA TGCTGGCACC ATCAACGTAG CGGTAAATGG CAGCCAAGTT
GGCAGCCTCA CTGCGCCAGT AACCGGCGAT TGGCAGGTGT ACCAAACCAC GCAAATTACT
GTCAATCTTC CTGCTGGTGA GCATGTTTTA CGCTTAAATT TTGCTAGCGC GGGCATGAAT
GTAAATTGGT TTGAAGTGAG TGAAGGTCAA GCGCCACCCC CTCCACCCCC TGTAAACCCA
TGTGACGGTT TTATGCAAAA TCTACCTAGT AAAGTAGAGG CAGAAGATTA CTGCGATATG
AATGGTTTAC AAACCGAAGC GACAAGTGAT TCCGGCGGCG GTGAAAACAT CGGTTGGATA
GACGCAGGTG ATTGGGCGGA CTACGGCATT AATGTAGATA CAAACACTCA CTTTATTCTT
AAGTTACGTG TTGCCAGTCA AAACGGTGGC GGCAAGGTAA ACATAAATGT AGATGGCGCT
AACGTTGGTG GCTTTGATGT GTCGAGCACC GGCGGCTGGC AAAACTGGCA AACACTTTCT
ATGCCGTTAA CGTTAAGTGC AGGTAACCAT GTATTACGGT TAGATTTTCT TGCCGGTGGT
TTAAATGTTA ACTGGGTTGA GTTTACACCT GCTACAACCA CGCCACCTAC CGAGCCGCCT
GCCACGGGCG AATTAGAGGA AGGTACTTAC TACATTACTA ACGAAGCCTC TGGTAAAGCG
TTAGATGTGT CTGGTGTGTC TACTAGCAAC GGTGCCAATG TTCATCAATG GGCATATGGC
GGCGGTTTAA ATCAGCAGTG GAATGCACAG CACGTAAGTG GCAATACGTT TGAGTTGGTA
AGTCTAAACA GTGGTTCTTG TTTGGATGCC GACAGCGGGA GCGATAACGC ACATCAGTGG
GCTTGCGAAG GCAACACTAA CCAGCAGTGG GTTATTGAAG AGCAATCAGA TGGCAGCTAC
TTAATTCGTA CCAAAGCCGG CAACGAAGTA TTAGAAGTGC AAAATGGCAG CGCTAATAAC
GGTGCTAATG TACGTACTGC CGGTGCAGCC AATAGCGATC GTCAAAAATG GCGTTTTAAC
ATTGTTCAGT AA
|
|---|
| Protein sequence | MKQSHHNTKG KLGLGRALLC GLMLSVMLGS SAHAQFVHTD GTRILDENGE ELNFNGINLG
NWLLWEGYLM MGDFNYRTHT QFLNSLTDAF GSAAKAAEFE HQWRLNYVDE QAIADLSALG
FNSVRVPFHY NMFWENGQLS NHGFQYFDRV IEWCRTYNMY VLLDMHAAPG YQNPGDHADN
VDSNASQPRD TVKFWDGNNV QIAATVWRHI ANRYKDEPVV WGYDLINEPV PQPTREFELL
SSMVTMRNAI REVDNNHTIV VEGSWWSSDL TKIDWTDPEV QAASGVYSQW DDNLVYQLHH
YGPLSDTVGR DAITDNLNIP LIIGEYGETD NGNLAAMTDW AKQNLSGYFP WSFKKMSHDK
TLWTIPPNAA YNQVKAYINN GGTPPTHLYA DMIAFAQNNV RNGHSSHQWH QGFYDAINPG
NTPPPPPPPP PPAPTCDDSN AQTFTLPSRV QAEDHCASSG IQQESTGDID GNQNIGWIDA
GDWAEYNVTL NTAGEYTFAA RVAANANAGT INVAVNGSQV GSLTAPVTGD WQVYQTTQIT
VNLPAGEHVL RLNFASAGMN VNWFEVSEGQ APPPPPPVNP CDGFMQNLPS KVEAEDYCDM
NGLQTEATSD SGGGENIGWI DAGDWADYGI NVDTNTHFIL KLRVASQNGG GKVNINVDGA
NVGGFDVSST GGWQNWQTLS MPLTLSAGNH VLRLDFLAGG LNVNWVEFTP ATTTPPTEPP
ATGELEEGTY YITNEASGKA LDVSGVSTSN GANVHQWAYG GGLNQQWNAQ HVSGNTFELV
SLNSGSCLDA DSGSDNAHQW ACEGNTNQQW VIEEQSDGSY LIRTKAGNEV LEVQNGSANN
GANVRTAGAA NSDRQKWRFN IVQ
|
|---|
| |