Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Sde_2991 |
Symbol | |
ID | 3967752 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Saccharophagus degradans 2-40 |
Kingdom | Bacteria |
Replicon accession | NC_007912 |
Strand | - |
Start bp | 3801424 |
End bp | 3804465 |
Gene Length | 3042 bp |
Protein Length | 1013 aa |
Translation table | 11 |
GC content | 45% |
IMG OID | 637922088 |
Product | hypothetical protein |
Protein accession | YP_528460 |
Protein GI | 90022633 |
COG category | [P] Inorganic ion transport and metabolism |
COG ID | [COG1629] Outer membrane receptor proteins, mostly Fe transport |
TIGRFAM ID | [TIGR01782] TonB-dependent receptor |
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Plasmid Coverage information |
Num covering plasmid clones | 0 |
Plasmid unclonability p-value | 0.0000283322 |
Plasmid hitchhiking | No |
Plasmid clonability | unclonable |
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Fosmid Coverage information |
Num covering fosmid clones | 1 |
Fosmid unclonability p-value | 0.000000325565 |
Fosmid Hitchhiker | Yes |
Fosmid clonability | hitchhiker |
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Sequence |
Gene sequence | ATGCGCAATA ACAATAAAGA GGCTAGACAA GTGAATACAA CCGAGAGAAC CCCTAGTAAC GGACGCTTTA GAAAGTCGCT TCTAGTAAGT GCTATCGCTG CTGTGTCCTG TATTAACGTT GCGCATGCAC AGGAGTCGGA AGGTCAGCTT GAAGAAGTTG TTGTTACCGG CACGCGCGCA ACAATCCAAT CTACGATCGA TATTAAACGC AATTCCACCA CTATTGTTGA TGGTTTATCT GCTACCGATA TTGGTGATAT GCCAGCGCTT TCTATTGGTG AGGCGTTAGA GAATATTACA GGTGCTGCTT CTCACCGTGA GAACGGCGGC GCAACCGAAA TTTCTATTCG TGGTCTTGGC CCATACTTGA GCGCCACTAC CTTTAACGGC CGCGGTGCTA CCAATGGTAG TGGTGACCGT TCTGTTAACT TCTCTCAGTT CCCATCTGAA TTAGTAAACA AAATTGCAAT TTACAAAACC CAAGACGCCA GCCTAATTGA AGGTGGTGTT GCTGGTTTGA TTGCATTAGA AACTGTTAAG CCTTTGGAAT ACGGTAAGCA ACGTATCCAG GTTGATGCCA AATTAAACTT CAACCCTAAT CAAGCAAATA TTGACGACCC AATGAACGGT AACTTGGGCT TCCGTGGCAC GGTAAGCTAT ATTGATCAGT TCGAAATTGG TGATGCCGCT TTGGGTGTGT CTTTGGGTTA CCAGAAGAGT GATATTTCTC AGCCAGAATC TGAGATGCGT TCTTCTAGCC CGAGTGGTTC ATCTTTGTAT GCTTGTTTGT ATGATCCAGA TATTAGTGCT GGTTTTTATC GCACGAGCAG CGGCGATTGC AATTCTGGTG GCACCTATAA CACTACGAAA GATCCTGAAA CGGGTAAGGC TGTAAATGAT GGCAGCCCTT ACGGCTTTGC CCCTAGCTCT AATGGCTACC GTCAAAATGA TACGGCTGAT GAGCGTGATG CGGTTTTTGC TGCGATTCAG TTCCAGCCTA CAGATAAGCT AGATATTAAT TTAGATGTGC AGCAGTCGAA GCGTGTTCAA GCTGAGCAGC GTCACGACTT AAACTTCGCT AACATGAGGC GTGTTACGCC AGGCATCACT GATCAGGCTG TTGTAATTAG CAGTACTGGT GCCGTTACTA GTTGGGCTGG CGAAACTGCT ATCGAATCTA ACAGCGAGAC ATACTCTCGT ACTGAAGAGT ATTTGGGTTA TGGTTTGAAT GTTGCTTACG AGCTAACCGA CGACATTACT ATTTCTGGTG ATTACTCTTT CTCTGAAACG ACTCGTGAAG AAGTGCAGTA TTTATTGCGT ACTCAATCGA ACAACGGTGA TGTGAATGGT GACTCATCTT CTTACCGTCC TTTGGTTGCT TGGGATATGG ATTCAGGTAT TCTCCAATAT GCTGTGTTAG ATTTTGACGT TACCGATCAT GCCGTATTCT CAGATGAATA TCGTGTACGA ATAGATAATG ATGTTGACCG AACTAACACT GCTACCGCAT TCCGAGCGGA TATTGATTGG CGTGTGAGCA CAGATTTTAT TACATCTGTT AAGGGTGGTA TACGATACTC AGAGCTAGAA TACCTAGACT TGGGTAGCGC GCGTAATGAA TTCGAAGTTG ATCGCAATAA CGTTAACCCG GAGACGAAAG CGTTAGATGT TGCAGCGATA TCTGCGGTGA ATACAGCATG TGCTATCGAT TTCCCAGAAA GTAACTTCCT AAGTAGCGAG CGAAGCGGCG ATTTAGTTAC TCAACTTGCT AGTGACGGCA GCGTGGTTGG TAGTTCGAAT AGTTGGGCGA CGTTTGACAC TGTATGTGCC GCTCAAATGA TTGCAAATTA TCGCGGTGAA AGTTTGGAGT ACCCTGAGCT AGAAGATGGT ACCTCTCAAG TTACAGACGT TACCGAAATG ACTACTGCTG CGTACGTAAT GGCGGACTTT GAAACTTCAC TTGCTAACAC TCCTGTTCGC GGTAACTTTG GTGTACGTGT AGTGCAAACA GAAGTTGAAT CTGTGGGTTA CCGTACAGCA TTTAACGTTG TAACAAACGA TTCTGGCACT TTGAAGTTAG AGCGTACCGG AGATACAGAG CAAGTAACTG CAGGTGGCGA TTACACTGAG TTGTTGCCTA GCGTAAACGT GATTGCAGAC CTTACTGATA ACTTGATGTT ACGTGGTGCT GTCTATCGTG GTCTATCACG CCCAGATCCT GCTGATCTTG GTTACAAGCG TGATTTCGAT GAGAACACCG AAGACGATAT TACCGACGTA AATCAGTTAA TCGATAGTGT TGATGGCGAC GGCAATCCCA ATATGCAGCC GCTTACTTCG TGGAACTTTG ACGCCGCTAT CGAGTGGTAT GCGAACGACG ATACTATGTT AGGTTTCGGT GTTTACCATA AGAAATTCCA GGGTGGTTTC GAAACCATTC GCACTACTGA GAGTTTCTTA ATAGACGGTG TTAGCACTCA AGCAGAATTT GATCTTGTTA GCACGAACGA AGAAACGAGT AACTTAACTG GTTTTGAGCT TAACGCTTCA CACAACTTCT CTTACTTGCC TGGCTACTGG AGTGGCTTGG GTGTGAAGGG TAGCTTCAAC CACGCGATCT CAGATTTCGA GTTCGAAGAT AGCAACTACG GTGATATCAC TAAGACGGAT GAGGATGGCA ATATCGTTGA GGAATACATT GGTATAGTGG AGCCTGGTAA CGTACCAGGC TTCTCTGAGA ATGTATTCTC TGGTCAGATC TACTACCAAA TTGGTGAGTT AGACACGAGC TTAATCTATA AGTACCGCAG CGAGTACTTC CAGCCATACA CAAGCAATGG TACGCGTTTG CGTTATGTTA GCGATGTGGG TGTGTGGGAA GCGCGTGTTT CTTACAAGCT AACCAAAAAC GTGAAGTTAA GCTTAGAAGC TATCAACTTG TTTGATGAGC CTAAAAAGCA ATACTTCTAC AGCCGCGACA ACTTAGGCGA GCTAAACAGC TACGGCCCAC GTATATTCGT AGGTGTTAAA GCTAAGTTTT AA
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Protein sequence | MRNNNKEARQ VNTTERTPSN GRFRKSLLVS AIAAVSCINV AHAQESEGQL EEVVVTGTRA TIQSTIDIKR NSTTIVDGLS ATDIGDMPAL SIGEALENIT GAASHRENGG ATEISIRGLG PYLSATTFNG RGATNGSGDR SVNFSQFPSE LVNKIAIYKT QDASLIEGGV AGLIALETVK PLEYGKQRIQ VDAKLNFNPN QANIDDPMNG NLGFRGTVSY IDQFEIGDAA LGVSLGYQKS DISQPESEMR SSSPSGSSLY ACLYDPDISA GFYRTSSGDC NSGGTYNTTK DPETGKAVND GSPYGFAPSS NGYRQNDTAD ERDAVFAAIQ FQPTDKLDIN LDVQQSKRVQ AEQRHDLNFA NMRRVTPGIT DQAVVISSTG AVTSWAGETA IESNSETYSR TEEYLGYGLN VAYELTDDIT ISGDYSFSET TREEVQYLLR TQSNNGDVNG DSSSYRPLVA WDMDSGILQY AVLDFDVTDH AVFSDEYRVR IDNDVDRTNT ATAFRADIDW RVSTDFITSV KGGIRYSELE YLDLGSARNE FEVDRNNVNP ETKALDVAAI SAVNTACAID FPESNFLSSE RSGDLVTQLA SDGSVVGSSN SWATFDTVCA AQMIANYRGE SLEYPELEDG TSQVTDVTEM TTAAYVMADF ETSLANTPVR GNFGVRVVQT EVESVGYRTA FNVVTNDSGT LKLERTGDTE QVTAGGDYTE LLPSVNVIAD LTDNLMLRGA VYRGLSRPDP ADLGYKRDFD ENTEDDITDV NQLIDSVDGD GNPNMQPLTS WNFDAAIEWY ANDDTMLGFG VYHKKFQGGF ETIRTTESFL IDGVSTQAEF DLVSTNEETS NLTGFELNAS HNFSYLPGYW SGLGVKGSFN HAISDFEFED SNYGDITKTD EDGNIVEEYI GIVEPGNVPG FSENVFSGQI YYQIGELDTS LIYKYRSEYF QPYTSNGTRL RYVSDVGVWE ARVSYKLTKN VKLSLEAINL FDEPKKQYFY SRDNLGELNS YGPRIFVGVK AKF
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