Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Sde_2989 |
Symbol | |
ID | 3967750 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Saccharophagus degradans 2-40 |
Kingdom | Bacteria |
Replicon accession | NC_007912 |
Strand | + |
Start bp | 3798591 |
End bp | 3800015 |
Gene Length | 1425 bp |
Protein Length | 474 aa |
Translation table | 11 |
GC content | 42% |
IMG OID | 637922086 |
Product | Ricin B lectin |
Protein accession | YP_528458 |
Protein GI | 90022631 |
COG category | [M] Cell wall/membrane/envelope biogenesis |
COG ID | [COG3264] Small-conductance mechanosensitive channel |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 35 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 1 |
Fosmid unclonability p-value | 0.000000129425 |
Fosmid Hitchhiker | Yes |
Fosmid clonability | hitchhiker |
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Sequence |
Gene sequence | ATGAAACTTA CACACATCCT TGTCATTCTT ACAATTTGCA TACCCTTTTC AAGCACCCTT GCGCAAAATG ACTCCCCCAA AGAGCATAAG CCTCCTGCGC ATACAGAAAA AAGCATTCAC GAAGCAAGTA TAGAAAATGT CTCTCGCATC ATTGAGGTGG AAGACGGACC TAGTGACGAA AAACTCAAAA AACGATTGCA ATCAATTCTT CAAAGCTCAG AAAAATACCA AAATTTAGAG GTTAGGGTCG CCAATGGCTT GGTTACTATT TACGCGATAG CAGATAACGA AAAAGACGTA GATTGGGCTG GTGACATAGC GAAGAATATT GAAGGCGTAG TAGCGGTTAT TAATAACATT TCAACCCCTA AACAAGATTA TTTCACGTTA GCCCCTGTGC GAGCTGAGCT ACTAGCAGTT TGGATAAAAT GCCTAGAAGC AGTGCCTCTT GTGATAATTG GCGCCCTCAT ACTTTCTACA TTTATTTTTA TTTCACGCTA TAGCTCTTAT ATCTTAGACA AGCCCATCAA CTACTTATCT CAAAGCGAGT TAATTCGTAT TGTTTTAAAA CGTGTCATCT CCACGCTTAT TATCATAGTC GGGTTTTACT TTTTTCTTAA AACGGCCGGC CTTACCCAAT TTGCACTAGC TATAATTAGC GGCACGGGTG TAATTGGTTT GGTGCTAGGT TTTGCTTTTC GCGACATAGC CGAAAACTTT ATATCAAGCT TGCTGCTTAG CGTGCAGCGT CCATTTAGGC TTGGCGATGT GGTAGAGGTA AGTGGCCACA AAGGTATTGT AAGAAAAGTA ACCGCCAGAG GAACAACATT AGTAGATTTT GATGGCAACC ACATACAAAT ACCTAATGCA ATTGTATATA AAAATATTAT TCAGAACTTC ACTGCCAACC CTAATCAGCG CGGCAAATTT ATTATTGGCA TTGGCTACGA CGCGAGCGTA CAAGGCGCGC AAACAATCGC TGTGGGGGTA GTGCAAAATC ATTTCGCCGT TTTGCAGGAC CCAGAACCTC AAGTACTTAT AGATCAACTA GGCTCGTCAA CTATTAACCT ACAAATTTTC TTTTGGGTAA ACGGCCATGA ATATAGTCTA CCCAAGGTTT CATCCATGCT CATGCGCCAA GTTATGCGAG AATTCGAACG CAACGGAATA TCAATGCCCG ACGACGCACG AGAAATAATA TTCCCTGAAG GTGTGCCTGT TTTTATGCAA GGTGAAAAAA CGTCCCTCAC AAATCAAGCC TCGCCCCCTC TGTCATCCTC CCATCAGATA CCACGTAACG CGCCCATAGA AAAAGACATA TCACCCAATA ACGAACAAGA AGACCTTAGT AGCGACAACC TAGATATTCA ACGCCAAGCA GATATGGCAA GAGACCCAGA AGAAGGGGCG AGTATAATCA AATGA
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Protein sequence | MKLTHILVIL TICIPFSSTL AQNDSPKEHK PPAHTEKSIH EASIENVSRI IEVEDGPSDE KLKKRLQSIL QSSEKYQNLE VRVANGLVTI YAIADNEKDV DWAGDIAKNI EGVVAVINNI STPKQDYFTL APVRAELLAV WIKCLEAVPL VIIGALILST FIFISRYSSY ILDKPINYLS QSELIRIVLK RVISTLIIIV GFYFFLKTAG LTQFALAIIS GTGVIGLVLG FAFRDIAENF ISSLLLSVQR PFRLGDVVEV SGHKGIVRKV TARGTTLVDF DGNHIQIPNA IVYKNIIQNF TANPNQRGKF IIGIGYDASV QGAQTIAVGV VQNHFAVLQD PEPQVLIDQL GSSTINLQIF FWVNGHEYSL PKVSSMLMRQ VMREFERNGI SMPDDAREII FPEGVPVFMQ GEKTSLTNQA SPPLSSSHQI PRNAPIEKDI SPNNEQEDLS SDNLDIQRQA DMARDPEEGA SIIK
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