| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sde_2976 |
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| Symbol | |
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| ID | 3967815 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Saccharophagus degradans 2-40 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007912 |
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| Strand | + |
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| Start bp | 3780587 |
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| End bp | 3783985 |
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| Gene Length | 3399 bp |
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| Protein Length | 1132 aa |
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| Translation table | 11 |
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| GC content | 45% |
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| IMG OID | 637922073 |
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| Product | two-component hybrid sensor and regulator |
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| Protein accession | YP_528445 |
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| Protein GI | 90022618 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG0642] Signal transduction histidine kinase
[COG2204] Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 12 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 13 |
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| Fosmid unclonability p-value | 0.210238 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGCGGCTA AACAGCAGAT TTATCGCGTT CGACGCAGTT ACAACCAGTG GGTGAACAAC
CAGACCCTAG AGGATTACGC GCTGCGCTTT ACCGCTAAGG CGTCTCGTAA ATGGTCGCTG
TTGCGGGTGG CAAACACTGC GCTTGGGTCT ATTTCATTTT TAGCCTTAGA GGCAATAGGC
GCTGCCATAA CCATTAGCTA TGGCTTCGAT AACGCCATGG CAGCCGTACT TGTGGTGGGT
TTGCTTATAT TCTTTGCAGG GCTACCCATT TGCTATTACG CTGCAAAATA TGGCGTAGAT
ATAGATTTGC TCACTCGTGG TGCAGGCTTT GGTTATATCG GCTCCACCGC CACCTCACTT
ATTTACGCTT CGTTTACATT TATATTCTTT GCACTTGAAG CCGCCATAAT GGCAAAGGCG
CTGGAGCTAA CACTCGGTAT TCCCCTAGCC ATTGGCTACA TTATTAGCTC ACTCGTCGCC
ATCCCACTGG TGTTTTACGG CATTACATTT ATTAGCCGCT TCCAATTGTG GACCCAACCA
TTATGGATAG CCCTACAACT CGCACCCCTT ATTTTTATTC TATTTAACGA CGCAACCTTA
GTGGCAGATT GGCAGAGCTA CACCGGCACC AAACAGTCCT CACCTGGGTT AAATATTTTA
TTATTTGGTG CAGCGGCATC GGTGATGTTT GCGCTAGTAG CACAAATTGG TGAACAGGTG
GATTTTTTGC GCTTTATGCC AGAAAAAACA GCCGGTAATA AAACACGCTG GTGGTGTGCA
CTTATTGCTG GCGGGCCGGG CTGGATAATC GTAGGCTGTA TTAAACTGGT AATAGGTTCC
TTTCTCGCTG TGGTGGCCAT TCAATACGGC AGTAGCCTTA TAGACGCTTC CGACCCCACC
ACCATGTATG CCATCGCCTA TGGCTACATT ACGCAGAACC AGCACCTTGC ACTGGTACTT
GCTGGCTTTT TCGTTGTGTT ATCACAATTA AAAATTAACG TAACCAACGC CTATGCAGGG
TCTATTGCTT GGTCTAATTT TTTCTCGCGC CTCACTCACA ACCATCCAGG CCGGGTTGTA
TGGCTGGTAT TTAATGTGTC AATTGCTTTG CTACTTATGG AGCTTGGCAT TTACCACGCC
TTCGAAAGTA CTTTAAGTAT TTACGCAATT ATTGCCGTTA GCTGGGTGGG GGCATTAGTA
GCAGATTTAA TAATAAATAA ACCGCTTGGC TTTAGCCCAC CCAACATAGA ATTTAAGCGC
GCACACCTTT ACGATATAAA CCCAGTAGGC GTAGGCAGCA TGCTTATCGC CTCGATTACT
GGTGTACTTG CTTACCTGGG CTTTATGGGT GAGCACGCAC ATGCGCTTTC TCACTTTATT
GCGCTGGCCA CAGCGTTTAT ATGCTCGCCC CTAATAGCTT GGGGCACAAA GGGTAAATAT
TATATTGCTC GCCCAGCCTA TGTATTTAGC GATCAACACC AGCATGTTAA ATGCAGTATT
TGTGAGAACA ATTACGAAAC CGAAGACATG GCCCAGTGCC CAGCATACGA CGGCTATATT
TGCTCGCTAT GCTGCTCGCT AGATGCGCGC TGCCAAGACC TATGCAAAAC CCATCAATCC
ATTAGCACTA GGCTTGTTAC ACTTGCGCAA CGTTGCCTGC CCAGCTTTGC TTCAAATTAC
TTAAATATTC GACTTGTACA TTTTGTATTA CTGCTCACCC TTGTGGGTGC AGTAACGGGT
GTTTTGTTAG CACTGGTTTA TACCAATATA AAAACCGATA GCCTTACTAT TAACCAGCTA
CTGGAAGCCA CCTTATGGAA GGTGTTTTTT ATACTCACCA TCGTAGCTGG CGTTATTTGC
TGGTTATTTG TATTGGCGCA TCAAAGCCAG ATTGTTGCGC AGGAAGAATC GCAAACCCAA
ACACGAAAAT TAGTGCAAGA AATAGAAGCC CACGAGAAAA CCGACTTAAA ACTACAAAAA
GCCAAAGAGC AAGCAGAAGC CGCTAACAAT GCCAAAAGTC GATATTTAAC CGGCATTAGC
CATGAATTGC GTTCGCCGCT AAACACCGTA TTAGGCTATG CCCAATTGAT GGAGATGGAC
TCGGCACTAA GCGAGGCTAA CCAAAATAAA ATAGCCGTTA TTAAACGCAG CGGCGAACAT
TTAGCTGATT TAATTGAGGG GCTGTTAGAC ATTTCTAAAA TTGAAGCTGG CAGATTAGAA
ATACAGCGCA ACACTATTCA ATTTAAAAGC TTATTGGGTC AATTAGAAAA AATGTTTTTG
CTACAAGCGC AAGACAAAGG CTTAACGTTC ACTTGCGAAC GTCTGTCACC CATGCCTGCA
ACAGTTATGG GCGACGAAAA AAGAGTAAGG CAAATACTTA TAAACTTACT CTCTAACGCC
ATTAAATATA CCGAACACGG AGAGGTGAAA TTTAGCATCA ATTACCGCAA CCAAGTCGCA
GAGTTCAAAA TTAGCGATAC CGGCGTGGGT ATAAATGAAG ATGAATACGA ACGCATATTC
AAGCCATTTG AGCGAGTGCG CCGCCCAGGT AGCCCAGCAG TGCCAGGCAC GGGCTTAGGA
CTAACCATTA CGCGCCTACT TACCGACATA ATGGGGGGCG ATATATCTGT AGAGCGCAAC
CCGAATGGCG GCAGTATTTT TACTGTTTGG CTAATGCTTT CTAGAGTAGA TACGCCCAAA
ACGGCGCAAG TAAAACCCAG AAAAATATAC GGCTACGAAG GCGAGAAAAA ATCGATAATG
GTGGTGGACG ATGACGCGAC TCACCGAGGT TTAATTGGCG ACCTACTTAC TCCATTGGGT
TTTGGCGTAG TGGAGGCACC AGACGCAGAG GCCTGCCTAG CCATGATAAG TTATTTCACA
CCCGATATAT TTTTAATAGA TAGACGAATG CCAGGCATGA ACGGGCCAGA GCTCGCAGCC
AAACTGCGAC AAATTGGGTT TAGCGTGCCC ATAGTAATGG TAACAGCCAA CGCCAATGAA
GATATTTTAA GCCACGATGA ATTAGCCCAG CAAAATAACA AAGAGGTAAG CGATACAGCC
TACAACGAAT ACTTAGTAAA GCCGATTAAG CTAGACCAAC TGTTACAAAC CTTAGATCGC
TACCTTGCTT TGCAATGGAA GCTCGCACCC AGCTCGTCGC ATAGCCTGCA AGAAATAGAG
TCCCGTGCGT TTAACGGCGA CGGCCTGCCT ACCCAAGATA TACGTGAAAA GCTTATCATA
CATGCAGAAA TAGGCCACCT AAGCATGCTT AAAACCATTG CTAATCAACT GGCAAACGAC
CCGAACATTA ACCCTTTATT TTTAACTCAG TTAAAAAAAT ATATTAACGA AGTTAAATTT
AAAAAAGTCA TCGAATTATT ACAGGTACCA TCCTTATGA
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| Protein sequence | MAAKQQIYRV RRSYNQWVNN QTLEDYALRF TAKASRKWSL LRVANTALGS ISFLALEAIG
AAITISYGFD NAMAAVLVVG LLIFFAGLPI CYYAAKYGVD IDLLTRGAGF GYIGSTATSL
IYASFTFIFF ALEAAIMAKA LELTLGIPLA IGYIISSLVA IPLVFYGITF ISRFQLWTQP
LWIALQLAPL IFILFNDATL VADWQSYTGT KQSSPGLNIL LFGAAASVMF ALVAQIGEQV
DFLRFMPEKT AGNKTRWWCA LIAGGPGWII VGCIKLVIGS FLAVVAIQYG SSLIDASDPT
TMYAIAYGYI TQNQHLALVL AGFFVVLSQL KINVTNAYAG SIAWSNFFSR LTHNHPGRVV
WLVFNVSIAL LLMELGIYHA FESTLSIYAI IAVSWVGALV ADLIINKPLG FSPPNIEFKR
AHLYDINPVG VGSMLIASIT GVLAYLGFMG EHAHALSHFI ALATAFICSP LIAWGTKGKY
YIARPAYVFS DQHQHVKCSI CENNYETEDM AQCPAYDGYI CSLCCSLDAR CQDLCKTHQS
ISTRLVTLAQ RCLPSFASNY LNIRLVHFVL LLTLVGAVTG VLLALVYTNI KTDSLTINQL
LEATLWKVFF ILTIVAGVIC WLFVLAHQSQ IVAQEESQTQ TRKLVQEIEA HEKTDLKLQK
AKEQAEAANN AKSRYLTGIS HELRSPLNTV LGYAQLMEMD SALSEANQNK IAVIKRSGEH
LADLIEGLLD ISKIEAGRLE IQRNTIQFKS LLGQLEKMFL LQAQDKGLTF TCERLSPMPA
TVMGDEKRVR QILINLLSNA IKYTEHGEVK FSINYRNQVA EFKISDTGVG INEDEYERIF
KPFERVRRPG SPAVPGTGLG LTITRLLTDI MGGDISVERN PNGGSIFTVW LMLSRVDTPK
TAQVKPRKIY GYEGEKKSIM VVDDDATHRG LIGDLLTPLG FGVVEAPDAE ACLAMISYFT
PDIFLIDRRM PGMNGPELAA KLRQIGFSVP IVMVTANANE DILSHDELAQ QNNKEVSDTA
YNEYLVKPIK LDQLLQTLDR YLALQWKLAP SSSHSLQEIE SRAFNGDGLP TQDIREKLII
HAEIGHLSML KTIANQLAND PNINPLFLTQ LKKYINEVKF KKVIELLQVP SL
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