| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sde_2974 |
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| Symbol | |
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| ID | 3967813 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Saccharophagus degradans 2-40 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007912 |
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| Strand | - |
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| Start bp | 3777931 |
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| End bp | 3778854 |
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| Gene Length | 924 bp |
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| Protein Length | 307 aa |
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| Translation table | 11 |
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| GC content | 47% |
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| IMG OID | 637922071 |
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| Product | putative branched-chain amino acid transport system permease protein |
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| Protein accession | YP_528443 |
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| Protein GI | 90022616 |
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| COG category | [E] Amino acid transport and metabolism |
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| COG ID | [COG0559] Branched-chain amino acid ABC-type transport system, permease components |
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| TIGRFAM ID | [TIGR03409] urea ABC transporter, permease protein UrtB |
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Plasmid Coverage information |
| Num covering plasmid clones | 32 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 14 |
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| Fosmid unclonability p-value | 0.196922 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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| |
Sequence |
| Gene sequence | ATGGGCGGTT ATACCTACAG CGAATTGGGG TCCATCTTGG CAATGCAGGG CTTCGCTGGA
ATTAGTTTAT TCAGCGTACT GCTTTTAATG GCGTTAGGGC TTGCCATTAT TTTTGGTCAA
ATGGGTGTAA TTAATATGGC TCACGGCGAA TTTATGGCCG TAGGCGCCTA CACCACTTAC
TTTATATCTA CCCTCACCGA GGCCTACTTT CCAGAGCTTA TGTCCTATTA CTTTGTGTTT
GCCATTTTGG TGGCCTTTGT AATGGCGGGG GCACTAGGGT ATTTCGCGGA ATTTATATTA
ATACGGCATT TGTATAAGCG CCCTTTAGAT ACGTTGCTGG CAACCTGGGG CCTAAGCCTA
ATTATGCAGC AGGCGTTTCG TTCTATTTTT GGCGCGCGCG AAGTTAGCCC GGCGCTACCA
GATTGGTTGA TGGGGTCTTA CCAGCCAACC GATACCATTG ATATTCCCCT TAACGGCATG
TTCGTACTTG GTTTAACCAC GCTTGTCACT CTGGGCGTAT TTTACCTTTT ATTTAAATCT
AGCTGGGGCT TGCGCGTGCG AGCTACTACG CAAAATCGTG TAATGAGTGG CGCGGTTGGC
ATAAACACTA AAAAAATTGA CCGTTACACC TTTGCTTTAG GTTGTGGCAT TGCAGGTATT
GCGGGCGCGG CGTTCACCAC CATTGCTTCT ACTGGGCCAA CTACTGGGTC GCTTTATATT
GTAGATACGT TCATGGTTGT GGTGTTCGGC GGAGCAGGTA GTTTAGTGGG CACTATATCG
TCAGCCTTTT CCATTGCGCA GGCGCAATCT ATTTTGGAGT TCTTCATAAG CGGTTCAATG
GCAAAAGTAT ACACGCTGTT GGCGTTAGTG TTGATTCTAA TGTTTAAACC AGAAGGTTTG
TTTGCCAGTA AGGTGCGTCG CTAA
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| Protein sequence | MGGYTYSELG SILAMQGFAG ISLFSVLLLM ALGLAIIFGQ MGVINMAHGE FMAVGAYTTY
FISTLTEAYF PELMSYYFVF AILVAFVMAG ALGYFAEFIL IRHLYKRPLD TLLATWGLSL
IMQQAFRSIF GAREVSPALP DWLMGSYQPT DTIDIPLNGM FVLGLTTLVT LGVFYLLFKS
SWGLRVRATT QNRVMSGAVG INTKKIDRYT FALGCGIAGI AGAAFTTIAS TGPTTGSLYI
VDTFMVVVFG GAGSLVGTIS SAFSIAQAQS ILEFFISGSM AKVYTLLALV LILMFKPEGL
FASKVRR
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