| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sde_2973 |
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| Symbol | |
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| ID | 3967812 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Saccharophagus degradans 2-40 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007912 |
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| Strand | - |
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| Start bp | 3776733 |
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| End bp | 3777884 |
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| Gene Length | 1152 bp |
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| Protein Length | 383 aa |
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| Translation table | 11 |
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| GC content | 44% |
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| IMG OID | 637922070 |
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| Product | branched-chain amino acid ABC transporter, permease protein |
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| Protein accession | YP_528442 |
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| Protein GI | 90022615 |
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| COG category | [E] Amino acid transport and metabolism |
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| COG ID | [COG4177] ABC-type branched-chain amino acid transport system, permease component |
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| TIGRFAM ID | [TIGR03408] urea ABC transporter, permease protein UrtC |
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Plasmid Coverage information |
| Num covering plasmid clones | 26 |
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| Plasmid unclonability p-value | 0.604364 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 14 |
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| Fosmid unclonability p-value | 0.198493 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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| |
Sequence |
| Gene sequence | ATGAGCTTTG TATATGAAAA TTTAATGGGT GGGAAAAAAG GCCTAACCGG CTTTTTAATT
CTCGCTGCTC TCATTCTGGT TGTTTTTCCA GTGTGTTTAG ATTTATTTAG GCTTAATTTG
GTAGGCAAGT ACTTAACCTA CGCGTTTGCC GCAGTAAGTT TAGTTTTGTT GTGGGGGTAC
GGCGGTACCC TTAGTTTAGG GCAGGGGATA TTTTTTGGTC TTGGCGGTTA TGCCATGGCG
ATGTTTTTAA AGTTGGAAGC CAGCTCGCCA GAAAACACAG CCATACAATC TACCCCAGGT
ATTCCAGATT TTATGGATTG GAACCAGTTA ACCGAACTGC CTTGGTTTTG GGTACCGTTT
AACAGTTTAA CTTTTACCAT TTTAGCTATT TTAATTGTGC CCACCGTGTT CGCCTACGTT
ATAGGCGCTG CCATGTTTAA GCGCAGGGTG GGCGGTGTTT ACTTTGCGAT TATTACCCAA
GTAGTGGCGG TTATTCTTAC GGTACTCATT GTGGGCCAGC AGGGGTTTAC CGGCGGTATT
AACGGCATAA CCGATTTGCG CACGCTAAAT GGCTGGGATA TCACCTCCGA CTCCGCAAAA
TATATATTTT ATTTTCTAAA CTGCTTTTTA TTGCTCGGTG TAATTATGCT GGGCCGTTTT
ATTCTTACCA GCAAGTTCGG TCGCTTATTG TTAGCAATGC GCGACAAAGA AGACCGCGTT
AGATTCTCTG GTTATGACGT TTCTAATTTC AAAATATTTA TCTTTTGTAT TGCTGCATTA
ATGTCTGCTA TTGGCGGCGC TATGTTCACT TTGCAAGTGG GCTTTATGTC ACCCTCTTTT
GTCGGCATCG TGCCATCTAT TGAGATGGTT ATATTCTGTG CGATAGGTGG GCGCATGTCG
TTAATAGGCG CTGTGTACGG CACCTTGCTA ATTAATTTTG GTAAAACGGC GTTTTCGGAA
TCCTTTCCTC AGCTTTGGTT GTTTTTAATG GGTGGGCTAT TTATCGCGGT TGTAATGTTC
TTTCCTAATG GGTTGGCCGG TATTTGGCAG GATTATGGCC ATCACCTAAC CACGCGTTTA
CAGCGCGCTA AAAAATGGTT GCTGTTGAAG TTTGGCGCAC AACCAAAAAC GTTAGCCGAA
GATGCGAGCT AA
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| Protein sequence | MSFVYENLMG GKKGLTGFLI LAALILVVFP VCLDLFRLNL VGKYLTYAFA AVSLVLLWGY
GGTLSLGQGI FFGLGGYAMA MFLKLEASSP ENTAIQSTPG IPDFMDWNQL TELPWFWVPF
NSLTFTILAI LIVPTVFAYV IGAAMFKRRV GGVYFAIITQ VVAVILTVLI VGQQGFTGGI
NGITDLRTLN GWDITSDSAK YIFYFLNCFL LLGVIMLGRF ILTSKFGRLL LAMRDKEDRV
RFSGYDVSNF KIFIFCIAAL MSAIGGAMFT LQVGFMSPSF VGIVPSIEMV IFCAIGGRMS
LIGAVYGTLL INFGKTAFSE SFPQLWLFLM GGLFIAVVMF FPNGLAGIWQ DYGHHLTTRL
QRAKKWLLLK FGAQPKTLAE DAS
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