| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sde_2885 |
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| Symbol | |
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| ID | 3968111 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Saccharophagus degradans 2-40 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007912 |
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| Strand | - |
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| Start bp | 3656374 |
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| End bp | 3658488 |
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| Gene Length | 2115 bp |
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| Protein Length | 704 aa |
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| Translation table | 11 |
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| GC content | 47% |
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| IMG OID | 637921982 |
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| Product | histidine kinase |
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| Protein accession | YP_528354 |
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| Protein GI | 90022527 |
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| COG category | [P] Inorganic ion transport and metabolism |
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| COG ID | [COG1629] Outer membrane receptor proteins, mostly Fe transport |
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| TIGRFAM ID | [TIGR03304] outer membrane insertion C-terminal signal |
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Plasmid Coverage information |
| Num covering plasmid clones | 1 |
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| Plasmid unclonability p-value | 0.00000018886 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
| Num covering fosmid clones | 4 |
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| Fosmid unclonability p-value | 0.000177766 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | decreased coverage |
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Sequence |
| Gene sequence | ATGAAAAAGT CAGTTTTAGC GTCCACCGTT GCAGCACTTG CTGTATACGG TATAAGTGGC
TCTGCCGTGG CGGGGCAGCT AGAAGAGATG ATCGTTACGG GTAGCCGTGT TGCAGAAAGC
CAAAGCGAAG TACCTGCTTC TGTGGCCGTA GTGGGCAGGG CTGAAATAGA GCAGCAAATG
CGCGTAAGTC CTGAGCTGCA AAATATGCTG GCTATTAAAG TACCTGGTAT GGCCCCTGCA
ACAGGTACTT CAAGTAACTC CGCGCAAACA CTGCGCGGTC GTAATGCACT AGTTATGATT
GACGGCGTGC CGCAATCTAC GCCTTTGCGA AATGGGTCGC TTGGTATTCG CACTCTGGAT
GGCAGCGTAA TTGAGCGTAT TGAAGTAGTA AAAGGCGCAA GCTCTGTTTA CGGTAATGGT
GCAGCGGGTG GAATGATCAA CTACATTACC CGCAAGCCTG ATGAAAGCCG CACGGTTGGC
GGTGAGGCGA GTGTACTTAC ACGCTTTAGC GCGGTAGATT TAGCTGATAG TTTCGGTCAG
CGTTTAAATG GCACTGTAGA TGGTAGCGTG GATAAATTTA GCTATGTATT TAGTGCTACT
TACGATAAAA CTGGTTTAGA GCGCGATGCC GAAGGCGACA TTATTGGCTT GATTTACGGC
TTATCGGAAA CCACCACGCA AAACTATTTC ACTAAGTTGG GTTACCAGCT TGATGACGAC
CAAGCGTTGC AAGTTACTTA CAACTACTAC GAGTCGCAAC AAGATGCCGA CTTGGTTGAT
GTGTCTGGCA GTGTAAATTC AGGTACCAAA ACCTACGCAA TTAAAGATAC CTCTGGCGAG
CCAAAACCTG GTGTGCCTCA AGGGCCACGC GGCAACCACA ATGTGATGGC GAAGTACACG
CACGATGCGC TATTTGCTAA CACCCAATTT GTTGCCGATG TGTACCAGCA AAAAATTGAA
AATGTGTTTT TCTTTTCTTC AGCATTGGCG AACCCCGATG AAGGTTATAC CGGCGGTCAG
TCGATGATTA AATCGGTTAA ATCTGGCGCG CGTTTTTCAT TCAACACCGC GGTTAACTGG
GATGGTGTAG ACGCAACGTT TATATACGGT TTAGACGCCC TTAACGACAC CACATCGCAA
CCACTTGTTG ATGGCCGTGT ATGGGTGCCA GAAATGGATA TGCGCAGCAA GGCACTTTAT
TTACAAAGTA AGTGGGTTGT TGCCGAAGAT GTTGTGATTA AAACCGGTGT GCGCAGTGAA
GATATTGATA TTAGCGTAGA TGACTACAGC ACTTTAAAAT TATGTCGCAC TGCCGAGACG
TGTTCGGTAC CGCTTGATGT GACCGGCGGC GAAATTAATT ACAACGCAAC CACCTATAAC
TTGGGTTTAC GTTACAACGG TTTCTCTGGC ATTAGTCCAT TTGTGAACTA TTCCCAGGGG
GCAGATGTAT CTGATATTGG CCGTCTATTG CGTACGGCTA CAGTAGAAGA TATTGCACTT
ATTCGCACCG ATGCGTCGCT TATTGATCAC TACGAAGTTG GTTTTGCTAG CGATTTCGAT
AACCTAAGCA TAGAAGTTGC CGCTTACCGC AGCACGTCGG AGCTGGGTAC GGGCAGCGAA
TACAACGCAG AAACAGGTGT ATATATGCCT GTGCGTGCGC CGCAAAAAAT CTGGGGCTAC
GAAGGCCAGT TTGAGTATCA AGTGAATGAA GACCTAACTG CAGGTGCAAC TTACACTTGG
GTGGAAGGTA AAGACACCGA AAACGATGTG TACTTAGGTG GTCGTCAAAT TAGTGCACCT
AAATTTACGG CATATGTTGA TTGGGCGTTT AATAGTAACG GTCAGTTACA TGCAACCGTT
TTAAGAGTGG GTGACCGCGA CCGTTTTGAA GCTGTAGATG GCAACTATGT AGGCGATCAA
GGCCCAATTG AAAGTTATAG CATTGTTAAC CTAAGTGCGA CTTACAGTTT TGGTAATTGG
TTGGCGCAAC TCGGTGTAGA AAACTTGTTT AACCAAGATT ACTACCCAGC GCGTTCGCAG
GTATACACCT ACAACGGTTA CAACACCAAA GGCTTGGGTA CCACTGTTAA CGCTGGCGTA
ACCTATTCGT TCTAA
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| Protein sequence | MKKSVLASTV AALAVYGISG SAVAGQLEEM IVTGSRVAES QSEVPASVAV VGRAEIEQQM
RVSPELQNML AIKVPGMAPA TGTSSNSAQT LRGRNALVMI DGVPQSTPLR NGSLGIRTLD
GSVIERIEVV KGASSVYGNG AAGGMINYIT RKPDESRTVG GEASVLTRFS AVDLADSFGQ
RLNGTVDGSV DKFSYVFSAT YDKTGLERDA EGDIIGLIYG LSETTTQNYF TKLGYQLDDD
QALQVTYNYY ESQQDADLVD VSGSVNSGTK TYAIKDTSGE PKPGVPQGPR GNHNVMAKYT
HDALFANTQF VADVYQQKIE NVFFFSSALA NPDEGYTGGQ SMIKSVKSGA RFSFNTAVNW
DGVDATFIYG LDALNDTTSQ PLVDGRVWVP EMDMRSKALY LQSKWVVAED VVIKTGVRSE
DIDISVDDYS TLKLCRTAET CSVPLDVTGG EINYNATTYN LGLRYNGFSG ISPFVNYSQG
ADVSDIGRLL RTATVEDIAL IRTDASLIDH YEVGFASDFD NLSIEVAAYR STSELGTGSE
YNAETGVYMP VRAPQKIWGY EGQFEYQVNE DLTAGATYTW VEGKDTENDV YLGGRQISAP
KFTAYVDWAF NSNGQLHATV LRVGDRDRFE AVDGNYVGDQ GPIESYSIVN LSATYSFGNW
LAQLGVENLF NQDYYPARSQ VYTYNGYNTK GLGTTVNAGV TYSF
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