| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sde_2834 |
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| Symbol | |
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| ID | 3968178 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Saccharophagus degradans 2-40 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007912 |
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| Strand | - |
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| Start bp | 3578665 |
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| End bp | 3582381 |
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| Gene Length | 3717 bp |
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| Protein Length | 1238 aa |
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| Translation table | 11 |
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| GC content | 49% |
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| IMG OID | 637921931 |
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| Product | glycosyl hydrolase-like |
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| Protein accession | YP_528303 |
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| Protein GI | 90022476 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG5498] Predicted glycosyl hydrolase |
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| TIGRFAM ID | [TIGR01435] glutamate--cysteine ligase/gamma-glutamylcysteine synthetase, Streptococcus agalactiae type |
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Plasmid Coverage information |
| Num covering plasmid clones | 1 |
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| Plasmid unclonability p-value | 0.00529602 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
| Num covering fosmid clones | 10 |
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| Fosmid unclonability p-value | 0.0523238 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGATACTGC GACTGATACG TGCCGCAATT TACATTGTGG CGTTTGTTTC TCTTATCGCC
TGTGGGGGCT CAAGCACATC CAAGCCCGCG CAACCGGATA TTCCCGATAC GGATCTGCCT
GACACGGGAA CACCCGAACC CGAAAACAGC GATCCAGTTG TTCAATCTAC GCCGGCTACA
GCCATTGCGG CGGGCAACGT GTATAGCTAT CAAATAATGG CTAGCGACGC AGACGAATCG
GATGTCATTA GCTATGCGGC GGTTACTTTG CCTAGCTGGC TGGCGTTCGA CCCAGATACC
GGAATACTTA CCGGCACGCC CCAGCAAGCT CATGCTGGTA ATGCTGAAGT GGTGCTTAGC
TATAGTGACG GCAACGTAAC CCTGCAGCAG CAATTTACAA TTGCAGTTAG CGCGAGCTAC
ACCGAAGAGC CACCAACACC GATGAGTCGC CCAACCGTAA ATGCGGCGGA TACCAGTACT
TACACTATTA CTGCCTACGG CGCGGGCAGT ATTGCGGATG CGATTAACCC TGCTAGCTAT
GGCTGTGTGT ACGATTACGG TAATTGGATT TATAACGCCG GCGTTGTGGA GCCAGGAGTA
AGCGGCTGTG ACCCTATAGG CGCACCAACC TACCGTACAC CGCAGGTGGT TGGGGAAGCG
GCAAGCGTGC CAACCCCAAC GCATAAATGG TGGGGCTCGG TTTCTTTTTT AGGTGAAATG
AAAATAGGTG ACCCGGCAGG CGCAGGTTAC ATAACGCCAG ACCCAATAAC TGCACGTATC
TCGAATAAAG GCGTGCGTAT TATGGGCATA CCCAACGGCT TGGGCGCGCA AGGCAACCAG
TTTATTTACT CTGTACCCGA CCCTTTTAGC GAGGTATTCG ATGGAATAGC GGTAGCGAAT
AGCGAATATG CCAACCTAGA AGCGTATTTA AAATCCTACA GCGATGGCAC CGCTACCGTG
CAATGGCAGA GTGGCAACCT GCCGGTTATG CAGGCCACAT TTGTACACGG CTCCCCCTAT
GTGTTTTTTA AAGCCTATCG CGGCAACATG GTGTTGCGCA CCAAAGCTGC AGACGGCGGT
GAAAAAGGCA CGTTTTATAA TGAAAATAAT AGTTTAGGTA TTTGGACCAG TGTAGCGGGT
AACAAAAATG ACTTTTTAAT TACCGGTGAA GGCGAAACGG TTTTTAACAA TATCGAAACC
GATACCATTA CGTTAACCAA TGCAGCGAAC GAATTTACCT TAACGTTATT ACCTACAGCG
GGCGCCGGTA CACCTTCAAG TACTGTTATT CAGGCGTTTG AAGATAGCGC CCGTGCAGTG
GTTGCCAAAG TAGATATTCA ATACTCGGTA GACCGTACCA ATAACATGGT AACGGTTACT
CATACCTATA AAAATGAAAG CAATACGCCA GTGCAAACCC TCGCGGGGTT ACTGCCCATG
CATTGGAAGT ATTCCGATAC AGCATTAAGC GGCTACAAAA CCCGAAGTGC GCGCGGGATG
GTGCAATTTG CCCATATTGA TTCGTTTAGC TACACCATTC CTTATGTGGG AGTATTACCG
TATTTACCGT CATCGGTAGG GGATTTCGAT TCCTCTGTGC TCGCAGGCTT AGTGCAGGCG
TTTGTAGCTG AAGGGCCAGA AAATTGGAAC CCGCACACCG ATACCTATTG GTCGGGCAAA
GCGTTTAATA AAGTTGCCGA GTTATCGGCA ATAGCGCGCT CGGTAGGTAT GACAAGCGAA
GCAGATACGC TGTTAAATTG GCTTAAAGCC GAACTGCAAG ATTGGTTTAG CGCCAACACC
AACGGCAGTT TGGATGAGAA AAAATACTTT GTGTACGATG CCGAGTGGAA TACCTTGCTT
GGCCTAGAAG AATCTTTTGC TGCACACCAA CAACTAAACG ATCACCACTT TCACTACGGC
TATTTTGTAC GCGCCGCTGC AGAAATATGC CGAGTAGATG CAAGCTGGTG TGGCGCAGAC
CAGTATGGTC CCATGGTGGA ACTGCTTATT CGCGATTACG CCGGTGCCAA AGACGATACT
ATGTTCCCTT ACGTGCGTAA CTTCGACCCC GCCAATGGCT TTTCTTGGGC ATCGGGTAGT
GCCAACTTTG TGCTGGGTAA CAACAACGAA TCCACATCCG AAGCGGCCAA TGCCTATGGT
GCAATTATTC TGTACGGGTT AATAACTGGC GATAATGAGT TAGTGGAGCG CGGTATGTAT
TTGCACGCGT CTTCGTCGGT GGCCTACTGG GAATATTGGA ACAACATCGA CCGCTACTTG
GGGGCCGATG CCGACCGCGA TAATTTTCCA TCGGGTTACG ACAAACTAAC TACCTCTATT
ATTTGGGGGC ATGGCGGCGT GTTCTCTACC TGGTTCAGTG GCGCTTACGC TCATATTCTT
GGTATTCAAG GGCTGCCTAC CAACCCGCTT ATTTTTCATG TGGGCTTACA CCCCGAGTAT
ATGGAAGACT ATGTGGCACT GGGTTTAAGT GAATCGAGCA ACAATAAACC TTCGGGGTTA
ATCGACGATC AGTGGCGCGA TATTTGGTGG AACCTATGGG CCTTGACTGA TGCAGAAGCG
GCCATCGCCG ATTACAACAC GGTAGGCAGT AACTATGCGC CAGAGTTTGG TGAAACCAAG
GCGCACACCT ACCACTGGTT GCACACGTGG AATGCGCTCG GCCATTTAAA AACCGGCACT
GGCGAGCTAA CGGTAAACGA CCCCGCTGCA TTAGTGTTTG AAAAGGACGG AATAAAAACC
TACGTAGCGT ATAACTTTAG CGGTACACCA AAAACTATTT TGGCTAGCGA TGGCTTTGAG
TTTATTGCGC AGCCCAATGA TTTTACCGTG GTGACCACCG CCGATAACAA CCCCGACGAC
ACGCAACCGC CTACACTACC GGCAAACTTG CAAGCGCTTA ACCTTACCCA AACGAGCTTG
GATGTTAAAT GGGATGCATC TACCGATAAC TACCGTATGG CAGGTTATGT AGTGCAGGTA
TTACAAGCCG ATACATTAAT AGAAGAAACG TCTTCTATAG CCAGCATCGC CTCGTTTAAT
AACTTAACGG CCAGCACAAG TTACACCATT CAAGTTAAAG CTAAGGATCG CTCTGGCAAT
GAAACCGCAT GGGTAAGCAT TACGGTAACC ACGCCCAGCG AAACCGACGA TTTACTACCA
ACACTTGATG GCGGTGTATA TAGCGCAAAC GTGGGGCCTA ACTCTGCGGA TTTAAGCTGG
GCGGCAGCAA CAGATGATCG CGGTATAGCA AGTTACACCA TAGAGGTGCA GGTTGGCGGC
GCAGTATTTG TAACTGAAAC AGTGTTTGAT ACTTCGTATG CGCTTAGCGG ATTGACCGAA
GCAACCGAAT ACAATGTGGC GGTTTATGCT ACAGATACCG GCGGTCAACA ATCTGCCACT
ATTAGCGGTA TTGTTAATAC CACCAGCAAT CCATTTGGCA GCGGTTGCGA ATTGATTTGT
GCCAGCGCTA CCTCTAGCTC ATCTGTTACG TTTACTGTGC ATCAAGCGGG CGCGGTAGAT
ATTCACTACT TAGTGAACGG TGGTAACCAG CAAAATGTAA GGATGTCTGC TCAGGCAGAC
ACAAGTGTTT ACGAGGTAAC TGGGCTAAGC GCGGGGGATG TGGTGCGAGT TTCGTTTACC
GTTATTCCAT TAGATGGCGG CGCGTACGAT ACCGATTGGG AAAACTACAC TTTTTAA
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| Protein sequence | MILRLIRAAI YIVAFVSLIA CGGSSTSKPA QPDIPDTDLP DTGTPEPENS DPVVQSTPAT
AIAAGNVYSY QIMASDADES DVISYAAVTL PSWLAFDPDT GILTGTPQQA HAGNAEVVLS
YSDGNVTLQQ QFTIAVSASY TEEPPTPMSR PTVNAADTST YTITAYGAGS IADAINPASY
GCVYDYGNWI YNAGVVEPGV SGCDPIGAPT YRTPQVVGEA ASVPTPTHKW WGSVSFLGEM
KIGDPAGAGY ITPDPITARI SNKGVRIMGI PNGLGAQGNQ FIYSVPDPFS EVFDGIAVAN
SEYANLEAYL KSYSDGTATV QWQSGNLPVM QATFVHGSPY VFFKAYRGNM VLRTKAADGG
EKGTFYNENN SLGIWTSVAG NKNDFLITGE GETVFNNIET DTITLTNAAN EFTLTLLPTA
GAGTPSSTVI QAFEDSARAV VAKVDIQYSV DRTNNMVTVT HTYKNESNTP VQTLAGLLPM
HWKYSDTALS GYKTRSARGM VQFAHIDSFS YTIPYVGVLP YLPSSVGDFD SSVLAGLVQA
FVAEGPENWN PHTDTYWSGK AFNKVAELSA IARSVGMTSE ADTLLNWLKA ELQDWFSANT
NGSLDEKKYF VYDAEWNTLL GLEESFAAHQ QLNDHHFHYG YFVRAAAEIC RVDASWCGAD
QYGPMVELLI RDYAGAKDDT MFPYVRNFDP ANGFSWASGS ANFVLGNNNE STSEAANAYG
AIILYGLITG DNELVERGMY LHASSSVAYW EYWNNIDRYL GADADRDNFP SGYDKLTTSI
IWGHGGVFST WFSGAYAHIL GIQGLPTNPL IFHVGLHPEY MEDYVALGLS ESSNNKPSGL
IDDQWRDIWW NLWALTDAEA AIADYNTVGS NYAPEFGETK AHTYHWLHTW NALGHLKTGT
GELTVNDPAA LVFEKDGIKT YVAYNFSGTP KTILASDGFE FIAQPNDFTV VTTADNNPDD
TQPPTLPANL QALNLTQTSL DVKWDASTDN YRMAGYVVQV LQADTLIEET SSIASIASFN
NLTASTSYTI QVKAKDRSGN ETAWVSITVT TPSETDDLLP TLDGGVYSAN VGPNSADLSW
AAATDDRGIA SYTIEVQVGG AVFVTETVFD TSYALSGLTE ATEYNVAVYA TDTGGQQSAT
ISGIVNTTSN PFGSGCELIC ASATSSSSVT FTVHQAGAVD IHYLVNGGNQ QNVRMSAQAD
TSVYEVTGLS AGDVVRVSFT VIPLDGGAYD TDWENYTF
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