Gene Sde_2769 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSde_2769 
Symbol 
ID3968365 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameSaccharophagus degradans 2-40 
KingdomBacteria 
Replicon accessionNC_007912 
Strand
Start bp3502323 
End bp3503216 
Gene Length894 bp 
Protein Length297 aa 
Translation table11 
GC content50% 
IMG OID637921869 
ProductAraC family transcriptional regulator 
Protein accessionYP_528241 
Protein GI90022414 
COG category[K] Transcription 
COG ID[COG2207] AraC-type DNA-binding domain-containing proteins 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones33 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones
Fosmid unclonability p-value0.00424718 
Fosmid HitchhikerYes 
Fosmid clonabilityhitchhiker 
 

Sequence

Gene sequence
ATGCAGAGCA GCCTTTACTT TCGCACCGAG ATGAGCGCAC CCTGGGGAGT AGCTGTACCA 
GCAAAGGGCA AGGTGGCGCG ATTCCACATT GCCATACGTG GGCAGTGCTG GTTGCGTGTT
GAGGGAGAAA ACAAACCTTT GTTTCTCGCC AATGGCGACC TAGTGATCAT CCCCCATGGG
GCGGCGCATG TGATGGGCGA TACTCAAGAG ACTGCGGCTA AACCATTGGG TGACGTACTA
TCGGAAACGC AATATACCGG TGAAGGTCCC TTGGTCTATG GCGGCGGCGG CGCAGGTTGC
ACCTTAGTCT GTGGTGAGTT TGCTTTTGAC GAACGTGAGA CCCATCCCTT GCTTGATAAT
CTACCTTCCG TGTTATCCAT TACAGCCGAT CAAGGACACC ACGCAAAGTG GTTAGATGCC
GTAATGGGTT TTGTTGCGCA TGAGGCCGCG CAAATGCGCC CAGGTGCGCA CGCCATTATC
CACCGCCTTT CCGATATTAT TTTTATTCAG GCTATTCGTT TACTACTCGA CAGTAGTCCG
CACAATATTC CTTTTCTTTC AGCCTTTGCC GACAATCGAA TCAGCATGGT GTTATCACGT
ATACACGCTG AGCCACAGCA CAAGTGGAGC GTCGAAAGTT TAGGGCAAAT TGCCAACATG
TCGCGCTCGG CCTTTTCCAA TCGGTTCTCT GAACTTACTC AAATGTCGCC TTTACAATAT
GTGATGTTTA TTCGGCTCAA TCGCGCCAGC CGCTTGTTAA TTGAAAGCGA TTATTCCTTA
GGCCAAATTG CCGAATTAAT TGGCTACCAA AGCGAAGCGG CTTTTAGTTT GGCTTTTTCT
AAACAGTTTG ACTGTCGACC TGGTGAATAT CGCAAGCGGG CTAGCACGCA ATAA
 
Protein sequence
MQSSLYFRTE MSAPWGVAVP AKGKVARFHI AIRGQCWLRV EGENKPLFLA NGDLVIIPHG 
AAHVMGDTQE TAAKPLGDVL SETQYTGEGP LVYGGGGAGC TLVCGEFAFD ERETHPLLDN
LPSVLSITAD QGHHAKWLDA VMGFVAHEAA QMRPGAHAII HRLSDIIFIQ AIRLLLDSSP
HNIPFLSAFA DNRISMVLSR IHAEPQHKWS VESLGQIANM SRSAFSNRFS ELTQMSPLQY
VMFIRLNRAS RLLIESDYSL GQIAELIGYQ SEAAFSLAFS KQFDCRPGEY RKRASTQ