Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Sde_2769 |
Symbol | |
ID | 3968365 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Saccharophagus degradans 2-40 |
Kingdom | Bacteria |
Replicon accession | NC_007912 |
Strand | + |
Start bp | 3502323 |
End bp | 3503216 |
Gene Length | 894 bp |
Protein Length | 297 aa |
Translation table | 11 |
GC content | 50% |
IMG OID | 637921869 |
Product | AraC family transcriptional regulator |
Protein accession | YP_528241 |
Protein GI | 90022414 |
COG category | [K] Transcription |
COG ID | [COG2207] AraC-type DNA-binding domain-containing proteins |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 33 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 8 |
Fosmid unclonability p-value | 0.00424718 |
Fosmid Hitchhiker | Yes |
Fosmid clonability | hitchhiker |
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Sequence |
Gene sequence | ATGCAGAGCA GCCTTTACTT TCGCACCGAG ATGAGCGCAC CCTGGGGAGT AGCTGTACCA GCAAAGGGCA AGGTGGCGCG ATTCCACATT GCCATACGTG GGCAGTGCTG GTTGCGTGTT GAGGGAGAAA ACAAACCTTT GTTTCTCGCC AATGGCGACC TAGTGATCAT CCCCCATGGG GCGGCGCATG TGATGGGCGA TACTCAAGAG ACTGCGGCTA AACCATTGGG TGACGTACTA TCGGAAACGC AATATACCGG TGAAGGTCCC TTGGTCTATG GCGGCGGCGG CGCAGGTTGC ACCTTAGTCT GTGGTGAGTT TGCTTTTGAC GAACGTGAGA CCCATCCCTT GCTTGATAAT CTACCTTCCG TGTTATCCAT TACAGCCGAT CAAGGACACC ACGCAAAGTG GTTAGATGCC GTAATGGGTT TTGTTGCGCA TGAGGCCGCG CAAATGCGCC CAGGTGCGCA CGCCATTATC CACCGCCTTT CCGATATTAT TTTTATTCAG GCTATTCGTT TACTACTCGA CAGTAGTCCG CACAATATTC CTTTTCTTTC AGCCTTTGCC GACAATCGAA TCAGCATGGT GTTATCACGT ATACACGCTG AGCCACAGCA CAAGTGGAGC GTCGAAAGTT TAGGGCAAAT TGCCAACATG TCGCGCTCGG CCTTTTCCAA TCGGTTCTCT GAACTTACTC AAATGTCGCC TTTACAATAT GTGATGTTTA TTCGGCTCAA TCGCGCCAGC CGCTTGTTAA TTGAAAGCGA TTATTCCTTA GGCCAAATTG CCGAATTAAT TGGCTACCAA AGCGAAGCGG CTTTTAGTTT GGCTTTTTCT AAACAGTTTG ACTGTCGACC TGGTGAATAT CGCAAGCGGG CTAGCACGCA ATAA
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Protein sequence | MQSSLYFRTE MSAPWGVAVP AKGKVARFHI AIRGQCWLRV EGENKPLFLA NGDLVIIPHG AAHVMGDTQE TAAKPLGDVL SETQYTGEGP LVYGGGGAGC TLVCGEFAFD ERETHPLLDN LPSVLSITAD QGHHAKWLDA VMGFVAHEAA QMRPGAHAII HRLSDIIFIQ AIRLLLDSSP HNIPFLSAFA DNRISMVLSR IHAEPQHKWS VESLGQIANM SRSAFSNRFS ELTQMSPLQY VMFIRLNRAS RLLIESDYSL GQIAELIGYQ SEAAFSLAFS KQFDCRPGEY RKRASTQ
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