Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Sde_2735 |
Symbol | |
ID | 3968368 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Saccharophagus degradans 2-40 |
Kingdom | Bacteria |
Replicon accession | NC_007912 |
Strand | + |
Start bp | 3464973 |
End bp | 3466646 |
Gene Length | 1674 bp |
Protein Length | 557 aa |
Translation table | 11 |
GC content | 51% |
IMG OID | 637921835 |
Product | alkylhydroperoxidase AhpD core |
Protein accession | YP_528207 |
Protein GI | 90022380 |
COG category | [L] Replication, recombination and repair |
COG ID | [COG0497] ATPase involved in DNA repair |
TIGRFAM ID | [TIGR00634] DNA repair protein RecN |
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Plasmid Coverage information |
Num covering plasmid clones | 13 |
Plasmid unclonability p-value | 0.0271976 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 39 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGCTTACCC ACCTGCATAT CAGTGACTTC ACCCTTGTTG ATACGCTCGA TCTTGAACTG CAACCAGGCC TTACCACCGT TACCGGCGAG ACCGGCGCGG GTAAATCTAT CACCCTAGAC GCCCTTGCCT TGGCCCTTGG CGACCGAGCC GACGCAGATA AAGTGCGCCC CGGCGCTAAA AAAGCCGATA TACACGCAAG CTTTTGCTTA AAGGCCCTAC CCTTTGCTCG CAAGCAACTC GAAGAGCAAG ACCTAGACCA AGGCGACGAA TGTATATTGC GACGTGTCGT TACCTCCGAA GGCAGGTCAC GCGCCTACAT AAATGGCCAC ACGGTTACTC TGCAGCAGCT GCGCAGCTTT GGCGAAAGCC TTATTGATAT TCACAGCCAG CACGAACACC AATCGCTGCT AAAAACCAGC ACCCACCGCC GCTTATTGGA CGATTTTGGT GGCAATGAAA ATTTGGTTAA GCAAATAAAA GCCGCTTTTA ACCAATGGCA CACAGCCAAT CAAACCCTTG AACAGGTGCG CAACAACAGC GAAGAAATTA ACGCGCGCTT TCAATTACTG CGCTACCAAG TAGAAGAGCT AGACCAATTA GATTTACAAG AGGGCGAGCT TGAGGCACTC GAAGAAGAAC AGAAAACGCT CGCTAACTCA GAAGAAATTC AACAGGGCTG CCAACAAGTT AGCGCACTGT GCAGTGACGA TGAACAAGGC TTAAACGCGG CCTTACACCA AGCTATACAC ATACTAAGTA AACTGCCGGG CAAGTCTAAG CATTTAGAAG AAGCCGAAAG CTTGTTTCGC AGTGCAAGCA TCCACGTAGA GGAAGCCCAA CGCGAAATAG ACCACCACAC CGACAGCATA GAAGACGATG CATCGCGCCT GCCTGAAGTA GAAGCGCGCT TGACGGTAAT ATACGACATA GCCCGCAAAC ACCGCATACA GCCAGAAGAA CTTATTGCAC TACACCAGTC ACTAGCTGAC GAACTTGCCA GCCTGCGCAG CGGTGACGAC CAATTAGAAG CGCTTGAGCA AGAAGCCGCC CAAACCAAGG CAGAATTCGA TACCTACGCA GCTAAGCTCA GCGAAAAGCG CGCGCAAGCA GCAAAGAAAC TAAGCACCCA AGTAAACAAA AAACTTAAGC AGCTAGCAAT GGAAAACGCC CTCTTCGATA TCTCGCTGCC TGCGGCCACC ACCAAACCTA ATCGCCACGG CAACGAAGAG GTAGAGTTTC TTATTTCTAC ACACCCAGGC CAAGCACCCA AAGCACTCAG CAAAATTGCA TCCGGCGGTG AGCTTTCACG CATAAGCTTA GCCATACAAG TTGTTACCGC ACAAACCTCC ACCACCCCCA CTATGGTATT CGATGAGGTG GATGTGGGTA TTGGCGGCCC CACGGGCGAC ATAGTTGGCC AGTTGTTGCG AGAATTAGGC GAAAAAGGCC AAGTTATTTG CGTTACTCAC CTTGCCCAAG TGGCGAGTAA GGCCCACCAA CACTTATATG TGAGCAAATC GGTAAGCAAA AAAGACGTGA AATCTGACGT TAGCTACTTA AGCCAAGAGC AAAAAATTGC CGAGCTTGCA CGCATGATGG GTGGCGACAC TGCGTCTGCA CAATCGCTTG CACACGCTAA AGAGATGTTA GAACAAGCCG TGCCAGCTAG CTAA
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Protein sequence | MLTHLHISDF TLVDTLDLEL QPGLTTVTGE TGAGKSITLD ALALALGDRA DADKVRPGAK KADIHASFCL KALPFARKQL EEQDLDQGDE CILRRVVTSE GRSRAYINGH TVTLQQLRSF GESLIDIHSQ HEHQSLLKTS THRRLLDDFG GNENLVKQIK AAFNQWHTAN QTLEQVRNNS EEINARFQLL RYQVEELDQL DLQEGELEAL EEEQKTLANS EEIQQGCQQV SALCSDDEQG LNAALHQAIH ILSKLPGKSK HLEEAESLFR SASIHVEEAQ REIDHHTDSI EDDASRLPEV EARLTVIYDI ARKHRIQPEE LIALHQSLAD ELASLRSGDD QLEALEQEAA QTKAEFDTYA AKLSEKRAQA AKKLSTQVNK KLKQLAMENA LFDISLPAAT TKPNRHGNEE VEFLISTHPG QAPKALSKIA SGGELSRISL AIQVVTAQTS TTPTMVFDEV DVGIGGPTGD IVGQLLRELG EKGQVICVTH LAQVASKAHQ HLYVSKSVSK KDVKSDVSYL SQEQKIAELA RMMGGDTASA QSLAHAKEML EQAVPAS
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