| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sde_2709 |
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| Symbol | nusA |
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| ID | 3968451 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Saccharophagus degradans 2-40 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007912 |
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| Strand | - |
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| Start bp | 3437188 |
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| End bp | 3438669 |
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| Gene Length | 1482 bp |
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| Protein Length | 493 aa |
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| Translation table | 11 |
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| GC content | 48% |
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| IMG OID | 637921807 |
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| Product | transcription elongation factor NusA |
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| Protein accession | YP_528181 |
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| Protein GI | 90022354 |
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| COG category | [K] Transcription |
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| COG ID | [COG0195] Transcription elongation factor |
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| TIGRFAM ID | [TIGR01953] transcription termination factor NusA
[TIGR01954] transcription termination factor NusA, C-terminal duplication |
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Plasmid Coverage information |
| Num covering plasmid clones | 26 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 18 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAAAAAAG AAATATTGCT CGTCGCGGAC GCTGTATCAA ACGAAAAAGG CGTTGATAAA
GGTATTATAT TCGAAGCAAT CGAATTGGCC TTGGCATCAG CCACCAAAAA ACGTTACGAC
GAAGATGCTG ATATTAAAGT AACGATTGAC CGCAAAGATG GCGATTATGT AACTGTTCGT
CGCTGGTTAG TTGTAGACGA CGATACCTTG GCCGAGCTTG GAACTCAGTT CACTACCGAA
GAAGCTATTG AGAAAGATCC ATCGCTCAAG CCTGGCGATG TGTACGAAGA AGTTATTGAA
AACGTAGATT TTGGTCGAAT TGCAGCGCAA ACCGCTAAGC AAGTTATTGT TCAAAAAGTA
CGTGAAGCAG AGCGCGCACA AATTGTTGAT GAGTACCGCG GCCGTGTTGG TGAATTAATT
GCCGGTACCG TAAAGAAAGT GACTCGCGAT AATATTATTG TGGATCTTGG CGGCAATGCT
GAAGGTTTGC TTCCTCGCGA AGAGTTAGTT GGCCGTGAAG TATTTCGTAT GAACGATCGC
GTGCGTGCCG TACTGGCTGA TGTGCGTCCA GAAGCGCGTG GCCCACAGCT CTTTTTGAGC
CGTGCATGCC CAGAGATGTT AATCGAGCTG TTTAAAATCG AAGTGCCTGA AATAGCAGAA
GAAGTTATTT CTTTAAATGC TGCGGCGCGC GACCCAGGCT CTAGAGCAAA AATTGCAGTA
GCTACAAACG ACGGCCGTAT AGACCCGGTT GGTGCTTGTG TTGGTATGCG CGGTTCGCGT
GTACAGGCAG TATCTAACGA ATTGGGTAAC GAGCGTATTG ATATTATTCT ATGGGATGAT
AACCCGGCTC AATTTGTTAT TAATGCAATG GCGCCGGCAG AAATTGAATC TATTGTTGTA
GATGAAGAAG CCGGCTCTAT GGATGTAGCT GTAGCCGAAG ATAATTTAGC GCAAGCTATT
GGTCGCGGCG GTCAGAATGT GCGCTTGGCG TCAGAGCTTA CCGGTTGGGA AATCAACGTG
ATGAGCGTTG ACCAGTGGAA TGAAAAACAA GCCGCCGAGG CGGGCAGTGC ACGCGATGTG
TTTATCAATG CACTTGATAT AGATGAAGAT GTGGCCGACG TGTTGGTGGA TGAAGGCTTT
ACCACCTTAG AAGAAGTCGC GTACGTGCCT TTGGAAGAAT TTTTGGCCAT TGAAGGCTTT
GATGAAGAAA TTGCAGAAGA GCTACGCAAT AGAGCGAAAG ATGCCTTGTT GACTCAAGCA
TTGGCTGGCG AAGAGAAAAA TCAGCCTGCT GATGATTTGG TTAACATGGA AGGCATGGAT
GACGCTTTGG CTCAAACTCT TGCAGCGCGC GGTGTGATCT GTATGGAAGA TCTCGCGGAG
CAGGCGGTTG ATGAGCTGAT GGAAATTGAC GGCATGGACG AAGAGCGCGC GGCTGCGTTA
ATTATGAAAG CCCGCGAGCC CTGGTTTGCA GACGAAGCCT AG
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| Protein sequence | MKKEILLVAD AVSNEKGVDK GIIFEAIELA LASATKKRYD EDADIKVTID RKDGDYVTVR
RWLVVDDDTL AELGTQFTTE EAIEKDPSLK PGDVYEEVIE NVDFGRIAAQ TAKQVIVQKV
REAERAQIVD EYRGRVGELI AGTVKKVTRD NIIVDLGGNA EGLLPREELV GREVFRMNDR
VRAVLADVRP EARGPQLFLS RACPEMLIEL FKIEVPEIAE EVISLNAAAR DPGSRAKIAV
ATNDGRIDPV GACVGMRGSR VQAVSNELGN ERIDIILWDD NPAQFVINAM APAEIESIVV
DEEAGSMDVA VAEDNLAQAI GRGGQNVRLA SELTGWEINV MSVDQWNEKQ AAEAGSARDV
FINALDIDED VADVLVDEGF TTLEEVAYVP LEEFLAIEGF DEEIAEELRN RAKDALLTQA
LAGEEKNQPA DDLVNMEGMD DALAQTLAAR GVICMEDLAE QAVDELMEID GMDEERAAAL
IMKAREPWFA DEA
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