Gene Sde_2704 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSde_2704 
Symbol 
ID3968446 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameSaccharophagus degradans 2-40 
KingdomBacteria 
Replicon accessionNC_007912 
Strand
Start bp3430224 
End bp3432392 
Gene Length2169 bp 
Protein Length722 aa 
Translation table11 
GC content46% 
IMG OID637921802 
Productpolynucleotide phosphorylase/polyadenylase 
Protein accessionYP_528176 
Protein GI90022349 
COG category[J] Translation, ribosomal structure and biogenesis 
COG ID[COG1185] Polyribonucleotide nucleotidyltransferase (polynucleotide phosphorylase) 
TIGRFAM ID[TIGR03591] polyribonucleotide nucleotidyltransferase 


Plasmid Coverage information

Num covering plasmid clones11 
Plasmid unclonability p-value0.0597018 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones10 
Fosmid unclonability p-value0.0425513 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
GTGCAATGGG GCACTCCAAG TCAAAAGGAT AAAAAAGTGA ATCCGGTAAT TAAAAAATTT 
CAATATGGTA ATGACACTGT AACTTTAGAA ACAGGTCGCA TTGCGCGTCA GGCTTCTGGT
GCAGTATTAG CTTCAATGGG CCAAACTTCA GTATTAGTTG CTGTTACAGG TTCTAAAGAA
GCCAAGCCAG GGCAAGATTT CTTCCCGCTG TCTGTTCATT ATCAAGAAAA AGCATATGCT
GCGGGTAAAA TCCCCGGTGG TTTTTTCAAG CGCGAAGCGC GCCCTTCAGA GAAAGAGACT
TTAACGTCTC GTTTAATCGA CCGTCCGATT AGACCATTGT TTCCAAACGG TTTTCTAAAT
GAAGTGCAGG TAGTTTGTAC TGTTATTTCT GCAGAGAAAG ACGTTGATCC AGATATTGTT
GCCATGATAG GTACCTCTGC TGCTCTCGCT ATTTCTGGTA TTCCATTTAA CGGCCCAATT
GGTGCCGCGC GTGTAGGTTA TACGCAAGAG TCGGGCTACT TATTAAACCC AACTTACTCA
ACTTTAAAAA CGTCTGAGCT AGACATGGTT GTAGCGGGTA CTGCCGATGC AGTGCTTATG
GTTGAATCTG AAGCTAAAGA GCTGCCAGAA GATATTATGC TAGGTGCAGT GCTATACGCT
CACCAAGAAA TGCAAGCTGT TGTGCAAGCT GTAGCTGAAC TTGCCAAAGA CGCCGCCAAA
CCTGTTTGGG ATTGGAAGCC AGAAGAAGTT AATGCAGAGC TAAAGGCTAA AGTTGAGCAC
GGTTTTGCGG ATTCTGTAGG TGTTGCTTAC CGCATTACCG ACAAGCAAAA GCGTTACGAT
CGTTTGTCTG AGTTGCGCAA TCAAGCGGTT GCTGAATTGG CTACCGAAGA ATCTGGCGTA
TCTGCAGATG AAGTTAAAGG CCTGTTTGCT AAAATCGAAA AGCAAATTGT TCGTTCACGT
GTTGTTGCAG GCGAGCCGCG TATCGATGGC CGCGACAGTA AGACTGTACG TCCACTACAC
GTAGAAGTGG GTGTTTTACC TAAGGTTCAT GGTTCTGCAC TGTTTACCCG TGGTGAAACT
CAGGCTTTGG TTGTTTCTAC TTTAGGTTCG GCCCGCGATG CACAAATTAT TGATGCATTA
GAAGGCGAGC GTAAAGATCC GTTTATGTTG CACTACAACT TCCCTCCTTA CTCTGTAGGT
GAGTGTGGTC GTATGGGGGC TACAGGTCGT CGCGAAATTG GTCACGGCCG TTTGGCACGT
CGCGGTATTG GCGCAGTTTT ACCAAAAGAA GAAGATTTCC CTTACACCAT GCGTGTAGTA
AGTGAAATCA CTGAATCTAA CGGTTCTAGC TCTATGGCCT CTGTATGTGG TGCGAGCTTG
GCGTTGATGG ATGCTGGTGT ACCTCTGAAA GCACCTGTTG CTGGTATTGC AATGGGCTTG
GTTAAAGAAG ACAACGGCTT TGCTGTTCTT ACCGACATTT TGGGTGATGA AGATCACCTA
GGCGATATGG ACTTTAAAGT TGCCGGTACT GCCGATGGTG TTACCGCTCT ACAGATGGAT
ATCAAAATTG AAGGTATCAC TGAAGAGATC ATGGAAATTG CTTTAGGGCA GGCCATGGAC
GCGCGTTTAC ACATTCTTGC GGAAATGAAC CGTGTTATCG CTTCTCCACG TAAAGAGTTG
TCTGAGAACG CGCCGCAATT CCACACCATG AAAATCGATC CAGACAAGAT TCGTGACATC
ATTGGTAAAG GCGGTGCAAC TATCCGTTCT ATTACTGAAG AGACTGGCGC ATCTATCGAT
ATCGACGATA ACGGCACAAT CAAAATCTAC GCCGACGATG GTGACGGTAT GCAAGCTGCT
ATCGCGCGTA TTGAAGAGAT TACTGCAGAA GCAGAGATTG GTGCTGTATA CCAAGGTAAA
GTTGTACGTA TCGTTGATTT CGGTGCGTTT GTTAACTTCT TGCCTGGTAA AGATGGTTTG
GTGCACATTT CACAAATCGC TCACGAGCGA GTACAAAATG TTTCTGACTA CTTGAAAGAA
GGTCAAGACA TTGAAGTGAA GTGTATGGAT ATTGACCAGC GCGGTCGTAT TAAGCTATCC
ATCAAAGAGT TACTGCCTGC TCCAGAAGCA GAAACTGCAG AAGCTCCAGC AGGAGAAGGC
GAAGAGTAA
 
Protein sequence
MQWGTPSQKD KKVNPVIKKF QYGNDTVTLE TGRIARQASG AVLASMGQTS VLVAVTGSKE 
AKPGQDFFPL SVHYQEKAYA AGKIPGGFFK REARPSEKET LTSRLIDRPI RPLFPNGFLN
EVQVVCTVIS AEKDVDPDIV AMIGTSAALA ISGIPFNGPI GAARVGYTQE SGYLLNPTYS
TLKTSELDMV VAGTADAVLM VESEAKELPE DIMLGAVLYA HQEMQAVVQA VAELAKDAAK
PVWDWKPEEV NAELKAKVEH GFADSVGVAY RITDKQKRYD RLSELRNQAV AELATEESGV
SADEVKGLFA KIEKQIVRSR VVAGEPRIDG RDSKTVRPLH VEVGVLPKVH GSALFTRGET
QALVVSTLGS ARDAQIIDAL EGERKDPFML HYNFPPYSVG ECGRMGATGR REIGHGRLAR
RGIGAVLPKE EDFPYTMRVV SEITESNGSS SMASVCGASL ALMDAGVPLK APVAGIAMGL
VKEDNGFAVL TDILGDEDHL GDMDFKVAGT ADGVTALQMD IKIEGITEEI MEIALGQAMD
ARLHILAEMN RVIASPRKEL SENAPQFHTM KIDPDKIRDI IGKGGATIRS ITEETGASID
IDDNGTIKIY ADDGDGMQAA IARIEEITAE AEIGAVYQGK VVRIVDFGAF VNFLPGKDGL
VHISQIAHER VQNVSDYLKE GQDIEVKCMD IDQRGRIKLS IKELLPAPEA ETAEAPAGEG
EE