| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sde_2687 |
|---|
| Symbol | |
|---|
| ID | 3968467 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Saccharophagus degradans 2-40 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007912 |
|---|
| Strand | - |
|---|
| Start bp | 3411190 |
|---|
| End bp | 3413373 |
|---|
| Gene Length | 2184 bp |
|---|
| Protein Length | 727 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 45% |
|---|
| IMG OID | 637921785 |
|---|
| Product | peptidase M41, FtsH |
|---|
| Protein accession | YP_528159 |
|---|
| Protein GI | 90022332 |
|---|
| COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
|---|
| COG ID | [COG4796] Type II secretory pathway, component HofQ |
|---|
| TIGRFAM ID | [TIGR02515] type IV pilus secretin (or competence protein) PilQ |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 6 |
|---|
| Plasmid unclonability p-value | 0.00137304 |
|---|
| Plasmid hitchhiking | Yes |
|---|
| Plasmid clonability | hitchhiker |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 9 |
|---|
| Fosmid unclonability p-value | 0.0272245 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGTTCACGC AAAATACAAA ATTAATATTA ATCGCTGGCT TGTTGGCGTT TTCTGGCCTG
GTGAATGGTG CCTCCCTTCA AGATTTGAGG TTTGCTGAGC TGCCAGGGGC TAAAGCGGAA
ATTAGAATGT TGTTTGATTC TGTGCCTAAT GCGCCTCAGG GGTATACCAT CGAGCAGCCA
GCACGAATTG TTTTGGATTT TTCCAGCACC ACAAATAGTC TTGCACAAAA GAAATACTCT
GTTTCTGTTG GTGATGTCGA CAGTGCCGTA GTGCTTGATG CGGGCGGTAA GACAAGATTG
ATTGTTAACC TAAGTAATTT GGCGCCTTAT ACGACTCGCT TGGAAGGGAA TGAGCTAATT
GTAGAAATCG GTGCTGATGT ATCAAAGTCG AGTGCTGTTG CTGCACATTC TCCTGCTGGT
GTTGTATTAA ATAACAGTCC AGAAGAGGTG CGTGTAGGTG CCGGTTCCGC GATTTCACTT
GTGGATTTTC GTCGCGGCGA GGTTGGAGAG GGTAAGGTTA TAATCTCCCT CACTAATCCT
GGAGTGGATG TGGATATTCA GGAAGTGGCC ACCGGTATTG AGGTGCGTTT CTTGGATACT
GAATTGCCTG AAAGTTTGCG CAGGAAGTTA GATGTTTTAG ATTTTGCAAC CCCTGTATCC
ATGGTTTCCA CTTTAAAAGA AGGTGGTGCT GCGGTTATCC ATGTGACAGC TAATGGTGAG
TACGATTACC TAGCTTATCA GGCAGATAAT AAGTACGTGG TGAGTGTTAA GCCATTAAGT
AAGGCCGAGA TAGAAGAGAA GAAGTCTCGC TTTGCTTATG TTGGTGATAA GTTATCCCTA
AATTTTCAGG ATATTCAGGT TCGGTCCGTT TTGCAGTTGA TCGCTGACTT TACTGACCTT
AACTTGGTTG CCAGCGATAC CGTCTCAGGC AGTATTACGC TTCGGTTGGA AAATGTGCCT
TGGGACCAAG CTTTGGATTT GGTGTTAAAA ACCAAGGGCT TAGATAAGCG CCAAGTGGGT
TCTGTGTTAA TGGTAGCGCC GGCCGCAGAA ATTGCAGCTA GAGAGCGGCA AGAGATTGAG
ACTCAAAAGC AGTTGCAAGA GTTGGCACCG TTGCGTACAG AGTATATTCG CGTTCGCTAT
GCCAATGCGC GTGAGTTGTT TAACTTGTTT ATTGATACCT CAAGTGGTGA AAGCGGCGGA
GCACCCGGCG GTTCCGGTTC TGGCAGCGAA AGAAACTCAA CGGGTAGCAT TCTCTCTGAA
CGAGGTCAGG CGATAGTTGA TGAGCGCACT AACTCGATAA TTTTGACTGA CACGGAAGAG
AAAATAGACG ACTTTCGTAG GTTGGTAGAC CGCATTGATA TCCCTGTTCG TCAGGTGATG
ATAGAGGCTC GCATCGTGAT AGCGAATAGC GACTTCAGGA AAGAGCTTGG AGTGCGAATG
GCTGGTGATG CGGTGGAAAC TTCTGTTTCT GGTGACACAA AGTTCGAAAT GACAGGGCGT
CTTACTGGCT TGACTGCTGC GGACGGTTCT GGACCAGAAG CCTTGTTCGT CGATACTGAT
GGTGATGGCG TGACTGATGA TGAGCGAAGC TTATTGGATT CGTCTTTGGT TGATTTAGGA
GTGTTTAATC CCGCGGGGGC CTTCACTTGG AACGTTATTA GTTCGAACTT CTTGCTAGGC
ATGGAGCTTT CAGCGTTAGA AAACTCTGGT TACGCAGAAA TTGTGTCTCA GCCAAAAGTT
ATTACTGGTG ATAAACAAAA GGCTTCTATC GAGTCGGGTA CTGAAATACC TTATCAAGAG
GAGTCGGCAA GTGGTGGTAC GACTACGTCA TTTAAAGAGG CTGTACTTAA GCTTGAAGTT
ACGCCTCAAA TTACGCCAGA TAATCGAGTA ATAATGGATT TGGTTATCAA CCAAGATTCA
ATTAGTTCTA TCGATGCAAA CAGTGGCATA CCTGTAATTG ATATTACTCA GTTAGAGACT
CAGGTGTTAG TGGCTGATGG CGAAACTATT GTGCTTGGCG GTATCTACAC AACCAATACC
TTTACCGGTG AGACTAAAGT GCCATTGTTA GGTGATATAC CCTTTGTAGG CAAATTATTC
CGCAACGACT TCAAATCCGA AGATAAGCGC GAAATATTGA TCTTTATCAC TCCTCGTATT
ATGGCTTCTA ACTTTACTGA ATAA
|
|---|
| Protein sequence | MFTQNTKLIL IAGLLAFSGL VNGASLQDLR FAELPGAKAE IRMLFDSVPN APQGYTIEQP
ARIVLDFSST TNSLAQKKYS VSVGDVDSAV VLDAGGKTRL IVNLSNLAPY TTRLEGNELI
VEIGADVSKS SAVAAHSPAG VVLNNSPEEV RVGAGSAISL VDFRRGEVGE GKVIISLTNP
GVDVDIQEVA TGIEVRFLDT ELPESLRRKL DVLDFATPVS MVSTLKEGGA AVIHVTANGE
YDYLAYQADN KYVVSVKPLS KAEIEEKKSR FAYVGDKLSL NFQDIQVRSV LQLIADFTDL
NLVASDTVSG SITLRLENVP WDQALDLVLK TKGLDKRQVG SVLMVAPAAE IAARERQEIE
TQKQLQELAP LRTEYIRVRY ANARELFNLF IDTSSGESGG APGGSGSGSE RNSTGSILSE
RGQAIVDERT NSIILTDTEE KIDDFRRLVD RIDIPVRQVM IEARIVIANS DFRKELGVRM
AGDAVETSVS GDTKFEMTGR LTGLTAADGS GPEALFVDTD GDGVTDDERS LLDSSLVDLG
VFNPAGAFTW NVISSNFLLG MELSALENSG YAEIVSQPKV ITGDKQKASI ESGTEIPYQE
ESASGGTTTS FKEAVLKLEV TPQITPDNRV IMDLVINQDS ISSIDANSGI PVIDITQLET
QVLVADGETI VLGGIYTTNT FTGETKVPLL GDIPFVGKLF RNDFKSEDKR EILIFITPRI
MASNFTE
|
|---|
| |