Gene Sde_2672 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSde_2672 
Symbol 
ID3968491 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameSaccharophagus degradans 2-40 
KingdomBacteria 
Replicon accessionNC_007912 
Strand
Start bp3388246 
End bp3389748 
Gene Length1503 bp 
Protein Length500 aa 
Translation table11 
GC content53% 
IMG OID637921770 
Productribosomal protein S15 
Protein accessionYP_528144 
Protein GI90022317 
COG category[G] Carbohydrate transport and metabolism
[S] Function unknown 
COG ID[COG0062] Uncharacterized conserved protein
[COG0063] Predicted sugar kinase 
TIGRFAM ID[TIGR00196] yjeF C-terminal region, hydroxyethylthiazole kinase-related
[TIGR00197] yjeF N-terminal region 


Plasmid Coverage information

Num covering plasmid clones32 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones22 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGACCGCAC CAGAACTTCC CACCAGTTTG TACACCAGTG AACAAGTCAA ACAGTTAGAT 
GCCCTCGCCA TTGAGCAAGC AAATATTGCC GGTATTGTAC TTATGAAGCG CGCCGGTCGC
GCAGCATTTG AATTACTGCT AGAACAATGG CCCCAAGTAG AGTCTGTAGT AGTGCTATGT
GGTGCCGGTA ATAATGGTGG CGATGGCTAT GTTATTGCGG CTTTGGCTGC GCAGAAAAAA
CTGAATGTAC ACGCTGTGGC GATAGCAGAC CCTGCTGGCC TAAGCGGTGA CGCACTTAAG
GCGTACAACT ACGCCCAGCA GGAAGGCGTA ACGGTTATAG CCGGTTCTGA GTTAAATACG
GTTCAAATTG ATGCTAGTAC GGTAATAGTT GACTCGCTGT TTGGCACTGG CTTATCGCGC
GAAGTAGAGG GCGATTATAG TCGTGCAATA GCTTGGGCAA ATAATTCCGC AGCCCCAGTA
TTAGGGGTAG ATTTGCCTTC TGGCTTGTGT GGCAATACCG GAAAAGTGTG GGGCGACGCA
ATAAAGTGTG CGGCGACTAT TACATTTATT GGTGTAAAAC GCGGTTTGTT AACCGGCCGA
GGCCCAGCCT TTACCGGTGA TGTGTATTTT GATGACCTAG GTGTACCCGC TTCCATATAT
GACGCCATTA AACCCGAGGT TACACGCACA TCGCGCTTGG CGCTTATGCC AAGCTTGCCA
GAGCGCGAAG CCGACGCTCA TAAAGGGCAG TTTGGCTATG TGTTAGTAGT AGGTGGTGAT
GTGGGTATGG GTGGCGCTGC CGCTATGGCA GGCGAAGCTG CTGCGCGCAC GGGGGCAGGG
TTAACGGGTA TTGCTACCCA GCCCATTCAT GTTGCGCCTA TTCTCGCCCG TTGCCCAGAG
CTTATGGTAA TAGGTGTGGC GTCAGGCCAG GCTATCGAGC CTGTATTGGC TAAACCAACG
GTTGTTGTAT TGGGCCCAGG CCTTGGGCGT GACTCGTGGT CGGAGCAAAT GCTGCAGCAA
GCAACACTTA CAGACTTACC CTTGGTAATG GATGCCGACG CATTGAATTT GTTGGCAGAA
GGGCGCGTAG TGCGAAAAAC GCAACGCGAT AACTGGGTGC TAACGCCGCA CCCAGGAGAG
GCGGCGCGCC TACTAGACTG CTCTGTGGCA GAAATTCAAG CCGATAGGTT TGCCGCAGCC
CGCGCTATTC AAACTAAATA TGGCGGTGTA GTCGTTTTGA AAGGCGCTGG AACCATTATT
GCCGGTGCGG ATCAATTAGT GGTGGCGAAT GTTGGCAACC CAGGAATGGC AACCGGTGGC
ATGGGCGACG TACTTAGTGG CGTGATTGGC GCCTTGATTG CGCAGGGTTT AACCTTATTT
GAAGCTGCTC AGTTGGGCGT GTGCGCCCAC GGTGATGCCG CCGATTTGGC CGTGCAAGAA
GCGGGTGTGC GTGGTGTAAT GGCGACCGAT TTAATTCCAT TTATTAGGGA GTTGTTAAAC
TAG
 
Protein sequence
MTAPELPTSL YTSEQVKQLD ALAIEQANIA GIVLMKRAGR AAFELLLEQW PQVESVVVLC 
GAGNNGGDGY VIAALAAQKK LNVHAVAIAD PAGLSGDALK AYNYAQQEGV TVIAGSELNT
VQIDASTVIV DSLFGTGLSR EVEGDYSRAI AWANNSAAPV LGVDLPSGLC GNTGKVWGDA
IKCAATITFI GVKRGLLTGR GPAFTGDVYF DDLGVPASIY DAIKPEVTRT SRLALMPSLP
EREADAHKGQ FGYVLVVGGD VGMGGAAAMA GEAAARTGAG LTGIATQPIH VAPILARCPE
LMVIGVASGQ AIEPVLAKPT VVVLGPGLGR DSWSEQMLQQ ATLTDLPLVM DADALNLLAE
GRVVRKTQRD NWVLTPHPGE AARLLDCSVA EIQADRFAAA RAIQTKYGGV VVLKGAGTII
AGADQLVVAN VGNPGMATGG MGDVLSGVIG ALIAQGLTLF EAAQLGVCAH GDAADLAVQE
AGVRGVMATD LIPFIRELLN