Gene Sde_2665 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSde_2665 
Symbol 
ID3968484 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameSaccharophagus degradans 2-40 
KingdomBacteria 
Replicon accessionNC_007912 
Strand
Start bp3380498 
End bp3381658 
Gene Length1161 bp 
Protein Length386 aa 
Translation table11 
GC content47% 
IMG OID637921763 
Productheat shock protein HslU 
Protein accessionYP_528137 
Protein GI90022310 
COG category[O] Posttranslational modification, protein turnover, chaperones 
COG ID[COG0330] Membrane protease subunits, stomatin/prohibitin homologs 
TIGRFAM ID[TIGR01933] HflK protein 


Plasmid Coverage information

Num covering plasmid clones23 
Plasmid unclonability p-value0.288159 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones20 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGGCCTGGA ATGAACCGGG TGGTAACAAC GATAAAGACC CTTGGGGTGG AAATCGTGGT 
AACGACGGCC CACCGGACCT AGACGAAGTT ATACGTAACT TTCAAAACAA AATAAGCGGC
TTATTCGGCG GTAAAGGTGG CGGAAACGGC ACCAATAATG GACGCAACGA AGGTGGCTTT
AATGGCACTA TTCTTATTTT CGCGTTAGTT GTTGTGGCTA TTATTTATGT GTTTGCCGGT
ATTTATCAGG TAGACCAAAA AGAGCGCGCT GTAGTATTGC ACCTCGGTAA ATATAGCGAG
ACTAAAGGCC CAGGCTTGCA CTGGAACCCA CCGTTAATCG ACTCTGTAAG CAAAGTGGAT
TCACTGAGTT TGCAGGAGTG GAGCACGGGT CAACAAATGC TTACCAAAGA TTTGAATATT
GTGGATATTC GTATGTCTGT TCAGTATTCA CGTATCGATC CTAAAGCTTA CCTTTTAGAA
GTGCGTGACC CAGAGATGAG CTTGCAGCAA GCGGCCAACA GTGCCTTGCG CCATGTGGTT
GGTTCATCAC CTATGCACAA CGTGCTTACC GAAGGCCGTG AGCAAATTGC AGTTGAAGTA
CGTGAGCTGT TGCAATTGTA TTTAGATAAC TACAAAACCG GCATCAACGT TGACAAGGTG
AACATCGAAG AAGCCGATCC CCCCAAAGAG GTTCAATCTG CGTTTGATGA TGTGAGTAAG
GCGCGCGAAG ACGAAGAGCG TCTTCAAAAC GAAGCTCAAA CCTATGCCAA CGGTATTATT
CCTAAGGCGC GTGGTGAAGC TCAGCGTGTT ATCGAGCAAG CTACAGCTTA TAAAGAGCAA
GTTATCGCAC AGGCAGAGGG TGAGGCGAAG CGTTTTGAAT ACTTGTTAGC TGAGTATAAA
AAGGCTCCAG AAGTTACCCG TCGTCGTTTG TACATAGATA CTGTGCAAGA AGTGATGGAA
AACAGCTCCA AGGTAATGGT GGATGTTGAG GGCGGTAACA ATATGTTCTA CATGCCTCTC
GATCAGATAG TTAAGGCTAC GCGTACTTCA ACCGCTAAGG CGGCTACACC GCAAGACGTG
GACGCGATAG TGGACCAAGT AATGAATCAA TTGCGCAGCG AAGCAGCGGC ACAGCAATCT
CGTCGCAGGG AGTTACGTTA A
 
Protein sequence
MAWNEPGGNN DKDPWGGNRG NDGPPDLDEV IRNFQNKISG LFGGKGGGNG TNNGRNEGGF 
NGTILIFALV VVAIIYVFAG IYQVDQKERA VVLHLGKYSE TKGPGLHWNP PLIDSVSKVD
SLSLQEWSTG QQMLTKDLNI VDIRMSVQYS RIDPKAYLLE VRDPEMSLQQ AANSALRHVV
GSSPMHNVLT EGREQIAVEV RELLQLYLDN YKTGINVDKV NIEEADPPKE VQSAFDDVSK
AREDEERLQN EAQTYANGII PKARGEAQRV IEQATAYKEQ VIAQAEGEAK RFEYLLAEYK
KAPEVTRRRL YIDTVQEVME NSSKVMVDVE GGNNMFYMPL DQIVKATRTS TAKAATPQDV
DAIVDQVMNQ LRSEAAAQQS RRRELR