| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sde_2655 |
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| Symbol | |
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| ID | 3968513 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Saccharophagus degradans 2-40 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007912 |
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| Strand | - |
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| Start bp | 3365912 |
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| End bp | 3369919 |
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| Gene Length | 4008 bp |
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| Protein Length | 1335 aa |
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| Translation table | 11 |
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| GC content | 46% |
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| IMG OID | 637921753 |
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| Product | agarase |
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| Protein accession | YP_528127 |
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| Protein GI | 90022300 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG0810] Periplasmic protein TonB, links inner and outer membranes |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 2 |
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| Plasmid unclonability p-value | 0.0452542 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 13 |
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| Fosmid unclonability p-value | 0.27666 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCGAAATT TAAATAAAAA TAAAGTACAT ATATTGCGAG CAGCAATTGC TGCAAGCATG
AGTGTACTGC CACTTGCTGC TGGTGCCGCC GATTATGTAA TCGAAGCGGA AAACTTTGTG
GCGCAGGGTG GCACCTACGT GGACGGACAA CCCAATAAAG TTAGCGTTTA TAGTGTTAAT
GGCGCAACCG CTATTAACTA TGTAAACCGA GCAGACTATA CCGATTACCA AATTAATGTA
GCTACCCACG GTTATTACAA TGTGCAATAT GCTATTGGTA CATCTGTAGC CAGTGGTGCG
GCTATTGAGT TACTCGTACA AAATGGCAGT AGCTGGGAAT CGCAGGGGCA AACAAATGTG
CCTGTTGGTC ATTGGGATAG TTTTCAGCCT TTAAATGCAA GTCATGAGGT AATCTTACCT
GCGGGCACTG TAAATTTACG TGTATATGGT GCGGGGTCTA ATGATTGGCA ATGGAATTTA
GATTCTATTT CTCTCACCCT AGAGAGCGCT ATTAACCCTC AGCCTGATCC AGATCCCGAT
CCTAGCCCTC AATTAGTAAA AACTGAAGCC GAAGCCTTTA ATGCGCAGAG CGGAACTTTC
GCCGATGGTC AGCCTACACC GGTGAGTATT TATACTGTTA ATGGAAAAAC GGCGATAAAC
TTTGTAAACA AAGGCGATGC CGTTGAATAC AACTTAGTTG CTCCGGCTGC CGGTTCATAC
GCATTAAAAT ACTCTATTGG TACCAGTGTT GCTTCCGGTA GTGAAGTAGA GTTTTTTGTT
TTAAAAAATA ATGTTTGGGT TTCACAGGGT AAAACACCTG TGCCGGCTGT TGGTTGGGAT
AACTTTACCT CTGTTGCCAG TGCGCAAACC GTTGAGTTAG CTGCTGGCTC AAATAAAGTT
AAACTTGTTG GTGCTGGCAC TAATGACTGG CAGTGGAATT TAGATTTCTT CGAGCTCACC
CTGGGAAATG TTGAACCAGA ACCAGAACCA GAACCAGAGC CAGAACCAGA GCCAGAGCCA
GAGCCAGAGC CAGAGCCAGA GCCAGAGCCA GAACCAGAGC CAGAACCAGA ACCTCAGCCA
GAGCCCGATG GCGACCCCGT TCCTGTAAGT GGCTCGTTTA AGTTAGAAGC CGAGCACTTT
CAAAAGGTAG GTGGCGAAGT ACAAATTTAT TCTCTATCGC CAGGCAACGC GGTTAATTAT
TTTAACAGCG GTGATTACCT AGAGTTCTAT GTCGACTTAG ATGCAGGCGG TTTGTATGAA
GCCAGCTTCA GAGTGGGTAC TGGTGTGGCC TCTGATGTAG CCGTTGGCCT AATGGTTACA
GATCACAAAG GTGACTTAAC ATTGAAGAGT GTTACACCCG TAACGGATCA AGGTGGTTGG
GATGCATTTT ATAATCTCAC CGCGCAAAGC CAGCTGAATA TTTATAGTGG TATAAACACT
ATTCGTATTA CAGGTGCAGG GTCTGCTGAT TTTCAATTTA ATATTGATAG CATCACTTTG
ACTCGTGTTG GGCCAATTAA CCCAGCGCTA GATGGGGATA ACGATGGTGT ACCAGATACA
TCAGATAACT GCCCAAGTAG CCCCGCCAAT GAAACGGCAA ACGCTGAAGG TTGTGTACCG
TCGCAATTAG ACACTGATGA AGATGGTATT AACGATAAAA TTGATCAATG CGATGCAACA
CCAGCAGGAG ATTTTGTTGA CGCCTTAGGT TGTACAAGTA CTGGTGGTGA CGACGATGAC
TTTGATGGCG TTTTAAACGG TGCCGATCAA TGTGGTAATA CGCCTTACGG TATGAACGTT
AATGCCCAAG GGTGTAGTGT GTTTTCTGGA AGCGATGCCG ATAACGACGG TGTTGCAAAC
AGCGAAGACA CCTGCGCAAA TACGCCTGCG TTAGAATTCG CTAACGAACA GGGTTGTTCT
TCGTCGCAAG TGGCAAATAC ACATGTTGTT AACGTAAGTG TTAATGCTAA CTTTAAGCGC
TCTGTAAATG GTGTATTTGA TTTCGGCCGC CGTCGTCACA TGACTGCTCA CACGGCTATT
CACGAGCCAG ATTGGGTAGG GCATACCGAT AAGTTAAATT ACCTATTCAA CACCCTAGAT
GTTTACATGG GGCGTGATAA CGGTTCGGCA ACGTGGAAGT TTAACGACAC TACCGAAGAT
CCTAATAAGC CCAACTGGCC AAATATGGAC TACATGGTTG AGCGCGGTAA AGGGTTGCGA
GAAGCGCATG ACCAAAACCC ATTGTTCAAA CGTTTTAGTG CCGAAAAACA ATTATTAATT
GCCGGTACTA ACCCGCACGC GTTGTACCCT ACCTTAAGTT GGTTCCCTAA CGCGTTTACC
TGGAGCGGTT GGCAGCCTAA AAATATTGAA ACATCTGCAG CATGGGTGGG ACAGTATATG
GAGCATTATT TTGCGAACGC TTCAAACGGC TATGTAGGTG AGCAGCTGCC CGAGTATTGG
GAAGTAGTAA ACGAACCGGA TATGAAAATG AAAACCGGTC AGTTTATGGT AACCAATCAA
GAGGCCATCT GGGAGTACCA CAACTTGGTT GCGCAAGAAA TTCGCGATCA CCTTGGCGCA
GAAGCACCTC CCATTGGTGG TATGACTTGG GGACAGCACG ACTTCTATCG TCGCGATGGC
ATTTCGCGTT TTGCCGATGA CTCTTACGAT CAGTGGATTA CAAACGATGA CCAAGTATTG
CAGGCAGAAG CTCGCGCTTT TTATCGCAAT GCTATGGCTA CCACTGTAGA TGATACTCGC
GACCAAGATT GGTATCAGTG GGATGTAATG TGGAAAGGCT TTATGGATGC GGCCGGCGAC
AACATGGACT TTTACTCTGT GCACATTTAT GACTGGCCAG GAGAGAATGT TGGTGATACT
ACTGTTGTTC GTCGTGGTGG GCACACCTCT GCCATGCTAG AAATGATGGA GTGGTACGAT
GTAAAACGTA ACGGCTTTAA CAACCGTAAA CCAATCGTAC TTTCGGAGTA CGGCTCAGTT
AATGGGGCTT GGGATAATCG CGCCCACGAA GAGCGTTACG ATATTGCAAG TATCAAAGCG
TTTAATGGCA TGTTAATGCA GTTCCTAGAG CGCCCAGACT ACGTAATAAA ATCTCTACCA
TTTACTCCTG CCAAACCTTT GTGGGGCTAC CTGCCTGGTG GTTGTGGCTA CGATGATGCA
GTGGCCTGTA CTACTCGTTA CCATTACGCC ATGTTAATTG AGGATGAGCT CAACAGTGGT
AATTGGGAAT GGTCTTCTTA CATAAAGTTC TACGAGTTGT GGGCAGATAT AGACGGCACT
CGTGTCGATT CTAAATCGTC TGATGTGGAT GTACAGGTTG ACTCTTATGT GAAAGGTAAC
GAGCTGTTCG TTATTCTTAA CAACTTAGAA GCGGCCGACA CAACGGTCAA CCTTGATGTA
AGCGGTATAG CCAGCGTGCA AAATGTTGAA TTGCGCAACA TGCATTTCGA TATTCAAGAG
ACGCATCTTG ATCGCCATCA TATGAGCGCT GCACCTAAAA CGGTTACTCT AGCCGCCGAT
GCGACTGTGG TATTACGTTA TACGCTTGCA AGCAGTGTTG CGGTAAATAA CACCGTAGTA
GAGAAAAAGT ACTTTGGTGA GAGTGTAAGT GGCGGTATAG AACCACATCG CATTTCGGTT
GCAGGCGGTG CTAAAACGCT TTATATCAAT AACGTTTCGG TTCCAAGTGG CTACAGCGAA
GCAATATTGC GCTTAACTGT ATCGCTTTAC CCAGACGAAG ACGATAAAGT GGGCGGCCAT
TTAAGCCTAG ATAGCATTAC TGTTAACGGC ACTGCCATAG AGGCGCCAAT AGATTGGAAA
GGCCCGAAAG CAAACCGTGC AGAACGATTC TTCGGCGTAC TTGATATTCC AGTACCTGTA
GAATTATTGC AATCTACTAA TACCATCGCA GTGGACTTCC GCCACAATGG TGAGTTAACG
GTAGCAAACT TAATTGTGTC GGAATTTACT TCTGAGCCAA ATAGATAA
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| Protein sequence | MRNLNKNKVH ILRAAIAASM SVLPLAAGAA DYVIEAENFV AQGGTYVDGQ PNKVSVYSVN
GATAINYVNR ADYTDYQINV ATHGYYNVQY AIGTSVASGA AIELLVQNGS SWESQGQTNV
PVGHWDSFQP LNASHEVILP AGTVNLRVYG AGSNDWQWNL DSISLTLESA INPQPDPDPD
PSPQLVKTEA EAFNAQSGTF ADGQPTPVSI YTVNGKTAIN FVNKGDAVEY NLVAPAAGSY
ALKYSIGTSV ASGSEVEFFV LKNNVWVSQG KTPVPAVGWD NFTSVASAQT VELAAGSNKV
KLVGAGTNDW QWNLDFFELT LGNVEPEPEP EPEPEPEPEP EPEPEPEPEP EPEPEPEPQP
EPDGDPVPVS GSFKLEAEHF QKVGGEVQIY SLSPGNAVNY FNSGDYLEFY VDLDAGGLYE
ASFRVGTGVA SDVAVGLMVT DHKGDLTLKS VTPVTDQGGW DAFYNLTAQS QLNIYSGINT
IRITGAGSAD FQFNIDSITL TRVGPINPAL DGDNDGVPDT SDNCPSSPAN ETANAEGCVP
SQLDTDEDGI NDKIDQCDAT PAGDFVDALG CTSTGGDDDD FDGVLNGADQ CGNTPYGMNV
NAQGCSVFSG SDADNDGVAN SEDTCANTPA LEFANEQGCS SSQVANTHVV NVSVNANFKR
SVNGVFDFGR RRHMTAHTAI HEPDWVGHTD KLNYLFNTLD VYMGRDNGSA TWKFNDTTED
PNKPNWPNMD YMVERGKGLR EAHDQNPLFK RFSAEKQLLI AGTNPHALYP TLSWFPNAFT
WSGWQPKNIE TSAAWVGQYM EHYFANASNG YVGEQLPEYW EVVNEPDMKM KTGQFMVTNQ
EAIWEYHNLV AQEIRDHLGA EAPPIGGMTW GQHDFYRRDG ISRFADDSYD QWITNDDQVL
QAEARAFYRN AMATTVDDTR DQDWYQWDVM WKGFMDAAGD NMDFYSVHIY DWPGENVGDT
TVVRRGGHTS AMLEMMEWYD VKRNGFNNRK PIVLSEYGSV NGAWDNRAHE ERYDIASIKA
FNGMLMQFLE RPDYVIKSLP FTPAKPLWGY LPGGCGYDDA VACTTRYHYA MLIEDELNSG
NWEWSSYIKF YELWADIDGT RVDSKSSDVD VQVDSYVKGN ELFVILNNLE AADTTVNLDV
SGIASVQNVE LRNMHFDIQE THLDRHHMSA APKTVTLAAD ATVVLRYTLA SSVAVNNTVV
EKKYFGESVS GGIEPHRISV AGGAKTLYIN NVSVPSGYSE AILRLTVSLY PDEDDKVGGH
LSLDSITVNG TAIEAPIDWK GPKANRAERF FGVLDIPVPV ELLQSTNTIA VDFRHNGELT
VANLIVSEFT SEPNR
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