| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sde_2654 |
|---|
| Symbol | |
|---|
| ID | 3968512 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Saccharophagus degradans 2-40 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007912 |
|---|
| Strand | + |
|---|
| Start bp | 3363402 |
|---|
| End bp | 3365768 |
|---|
| Gene Length | 2367 bp |
|---|
| Protein Length | 788 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 47% |
|---|
| IMG OID | 637921752 |
|---|
| Product | hypothetical protein |
|---|
| Protein accession | YP_528126 |
|---|
| Protein GI | 90022299 |
|---|
| COG category | [P] Inorganic ion transport and metabolism |
|---|
| COG ID | [COG3540] Phosphodiesterase/alkaline phosphatase D |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 23 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 12 |
|---|
| Fosmid unclonability p-value | 0.11522 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAAAAGAC GAGATTTTAT TAAAGTAGCC TCCACAACTG TCTCTGGAAT GCTAGGTACA
GTTGTTACAC CCAGCACAGC CGCTTTACAA GCTGCAAAGC GGCCCAACTT AGCAGCGCTT
TCACCCGTAG ACCCCATACC AAACAATGAG CAGCGCAATT GGCTGGGTAA AGCTTATTGG
GGTAACAGAT TACAAGACTG GCAAGTAAAC AACGGCAGAA TAGAATGCCT TCGCGCAGAG
GCGAGCTTTG AAGTGCGCAC TGTTGCCCTG TTAACTCGCG CCCTAAACAA CGCCCACAAA
CCCGCCCGCT TACGCATGCA TTTGGGTAAT CTCACCCCGT CTAAAAATGG TTTTTGCGGC
TTTTTATTGG GTATAGGTGC AGGTAAGTTA GATTACCGCG CATGTGCCTT AGCCCAGCGT
TACGGCGGGG AAAACGGCGG CTTTATGGCG GTAATTGATA GCTCCGGCGA ACTTAGCTTT
CGCGACTTTA GCAACCAAAA CAAGCCAATA GCTTACGAGC AGTTACAACG CACCACTCAT
AGCCAAACTA AAAAACCGCT AGCCGATAAA GACATTATTT TAGATTGCCA TATAGACCCA
ACCGACCAAG CAACGTTTGA TGTGCGCTTA ATAGCAAGCG ACGCCAAAAC TGGCGAAGAG
CTCGGTTTTA TTGTAAGAAC CCAGGTTCCA GCCTCCGAAC TACTAGGCGG TATTGCAATG
CTTTCCTCAC CGCCAGCCAA ACAAGCTGGC GCACGCTGGT GGTTTAATCG CATAGAAACT
GGCGGAGAAA AAATAAGTAT TAACGAGGAA CATGCACTTG GGCCTGTTAT GGGCTGTTTG
TACAGCTTAA ATAAATCGGT TTTAAAATTA ACTGCGCAGT TTTTACCTAT CGCAAATCCA
CACAAAAAAC ATGTTCGCTT AGAGTACAAG GCAGCGAAGG ATAACACCTG GAAACAGGGT
CAAACAAAAC CCATAGAAGA CGGTTATGTA GCCTGCTTCA GACTGAGTAA GTGGGATTTC
TCGCAAGCCT ATGAGTATCG AATAGTATTT ACCGACGCGC CCAATACCGC GCTGTTTTGC
GGCACAATTG TTAAAGATCA TCAATCAAGC AAACAGCTAA ATATTGCACT TTATTCATGC
ATTATTCCCA CAGCGAAAAG TTTAGATAGA GAAGTTTACG AAAAACTCAT TCCACAGGAA
GCCATTCTAG GGCGCTATAC GCCCGATAAT ATTTTATTCC CCCACAACAA ACTGGTAACA
CATTGCGATA GTCACGCACC GGACCTGTAT GTATTTGCTG GCGATCAATA TTATGAAACC
TACCCCACCC GCTATGGCCG CGATACACCT GACGCAAAAT TAGATACCCT ATACCGTTGG
TATTTGTGGT TTTGGACTTT CCGCGATTCG GTAAGACACA GGCCCGCCAT CGTAATCGCC
GACGATCACG ATGTGTTACA AGGCAACCTA TGGGGCAACG GCGGTAAAGA TTCTAGCGAT
AACACCGAAG AAGGCGGCGG CTTTAGCTGG GCAAAAGATT TAGTACGTAT GGTCTATCGC
ATTCAACATT CCCACAACCC TGATGCGTTT GACCCCACAC CCATTAAACA CGACATTCCC
GTTACCTACG GCGAATTCGA GTACGGCGGT GTAAGCTTCG CCATTATAGA AGATAGAAAA
TTTAAAACCC CGCCCAATAC CGAAGTGGAC CCATTACTCA CCAAAGGCGA GCTGTTGGGT
AAACGACAGG AAGATTTTCT GAAGCACTGG AGCGAAAACA ACACTCACCT ACCAAAAATA
TGTTTGACTG CATCCATGTG GGGGTCGCCT CAAACCAAAG GGAATGCCGA GCCTCTGCTA
GATTACGATG CCAACGGCTA CCCACCGGAT GGCCGTACAC GCGCCGTAAG CTTAGTTAAA
AGAGCCAACG CACTAGTATT AGCAGGCGAC CAACATTTGG CAATGGTTGC TAAACAAGGC
GTGAATGATT ACGAAGATGG AGCATTATTT TTTGCAGGCC CTGCCGCCGC CGCGTTTTGG
CAACGCTGGT TTGAAGGTGA AGGCAAGCTA GAAAACAAAC GTAACAATCA CCCTAACACC
GGTAATTTTA TTGATACTTT TGGCAATAAA ATGCGTGTAC TCGCGGTTGC CAACCCCAAA
TTAACTTACG CAGAATTTAA AGCCAGTAAC AAGCACTGGG GTAATTTTGT TGCCGATCAC
CGCTTAAAAA GTGAAGGTTA CGGAATAGTT AAAGTGGACC ACACTAAAAA GCAATATACG
CTTGAGTGTT GGCCGTGGGA TGTGGACCCG AATACCGGAG CACAGTTTGA AGGCTGGCCT
TTTGTGAAAA AGTGGCAAGA CAGATGA
|
|---|
| Protein sequence | MKRRDFIKVA STTVSGMLGT VVTPSTAALQ AAKRPNLAAL SPVDPIPNNE QRNWLGKAYW
GNRLQDWQVN NGRIECLRAE ASFEVRTVAL LTRALNNAHK PARLRMHLGN LTPSKNGFCG
FLLGIGAGKL DYRACALAQR YGGENGGFMA VIDSSGELSF RDFSNQNKPI AYEQLQRTTH
SQTKKPLADK DIILDCHIDP TDQATFDVRL IASDAKTGEE LGFIVRTQVP ASELLGGIAM
LSSPPAKQAG ARWWFNRIET GGEKISINEE HALGPVMGCL YSLNKSVLKL TAQFLPIANP
HKKHVRLEYK AAKDNTWKQG QTKPIEDGYV ACFRLSKWDF SQAYEYRIVF TDAPNTALFC
GTIVKDHQSS KQLNIALYSC IIPTAKSLDR EVYEKLIPQE AILGRYTPDN ILFPHNKLVT
HCDSHAPDLY VFAGDQYYET YPTRYGRDTP DAKLDTLYRW YLWFWTFRDS VRHRPAIVIA
DDHDVLQGNL WGNGGKDSSD NTEEGGGFSW AKDLVRMVYR IQHSHNPDAF DPTPIKHDIP
VTYGEFEYGG VSFAIIEDRK FKTPPNTEVD PLLTKGELLG KRQEDFLKHW SENNTHLPKI
CLTASMWGSP QTKGNAEPLL DYDANGYPPD GRTRAVSLVK RANALVLAGD QHLAMVAKQG
VNDYEDGALF FAGPAAAAFW QRWFEGEGKL ENKRNNHPNT GNFIDTFGNK MRVLAVANPK
LTYAEFKASN KHWGNFVADH RLKSEGYGIV KVDHTKKQYT LECWPWDVDP NTGAQFEGWP
FVKKWQDR
|
|---|
| |