Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Sde_2650 |
Symbol | |
ID | 3968508 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Saccharophagus degradans 2-40 |
Kingdom | Bacteria |
Replicon accession | NC_007912 |
Strand | + |
Start bp | 3352440 |
End bp | 3354803 |
Gene Length | 2364 bp |
Protein Length | 787 aa |
Translation table | 11 |
GC content | 47% |
IMG OID | 637921748 |
Product | agarase |
Protein accession | YP_528122 |
Protein GI | 90022295 |
COG category | |
COG ID | |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 1 |
Plasmid unclonability p-value | 0.00000351829 |
Plasmid hitchhiking | Yes |
Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
Num covering fosmid clones | 10 |
Fosmid unclonability p-value | 0.0319277 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGATAACTA GACCATACAC ACTACTCACA CTAACGCTTG CATTATTAGT AAGCCTTAGC GGCTGTGGCG GGGGCGGTAA ATCCTCCACA ACAGACCCAG ACCCAACCAC GCCAGAGCCA CAACCCGATA CAACCCCTGC AAGCTTTAGC TTCACAGCTA CAACAGGTGC TTCTCTCAAT AGCACTACCA CTTCCAACAC CATTACAGTA AGCGGAATTA ACACCGCTAC CACTGTTAGT GTAGTTAACG GCCAATACGC TATTGATAAC GGCAGTTTTA CCAGCGCCGA AGGCACGATT AATAACGGCC AAACCCTGCA AGTGCAGGTA ACCAATAGCG CCAATTACCA AACCACGACT ACGGCCACGG TTACAATTGG CGGAATATCA GCTAGCTACA GCGCCACAAC CATGGCAGAA CCCACTCAAG GTGTGGCAAT TGATGTAAAC CCCTATATAC GCCATAGCGT GGGCGGCGTA GATTCTTTCG ACCGCCGCAA ATTTATTACC ATTCACGCAT CGAATACAGA AAATGACTGG TTTGGCGGCA ACGACGCAAG CCTCGGGTTT GCAAATGAAT CCGACGACCT TATTACTGAG TTTTTAGAGG GCTACGATGT GTACTTCGGC CGCGATACCG GCGGTATTAG CTGGCATCTT AGCCAAACAC TAGAAGACCC AGCCAAACCA GGCTTTGCTG ACGAAGCCAA CATGACTTCA CGCGGTAACG ATACCAAAGG CTGGTACACC GTTAACCCAT CTGAAATTGC CATTAAGCAG CGTCAGCACG AACATCGCAA TACCGACATG ATTATTGGCA GCCAGCAACA TCCATTCTGG CCAGATGGTA AATTAACCGG CCAAGGTTGG GCGCTTTCGC AAACCGAGAC CGAAGCTGAA CCCTTTGGCA CTGCAACCGG CCACTACATG GCAAACTTTT TAGCCAAATT TTATAAGCAA AGTGAGAGCG ACCCTAACGG CCAGCCCAAA CCTGTATATG TAGAAGTAAT GAACGAACCA CTCTACGACT TGGTTGATGC CGCCACTAAC CCAACCACCC CCGAAAAAGT TTTCCTATTT CACAATACCG TTGCAGACGA AATTAGAAAA CTAAACGACG ATGTATTAAT AGGAGGCTAC ACTGTCGCCT TCCCCGATTT TGATTCCAAT AATTTCGAAC GCTGGGAAAA TAGAGATAAG GCCTTTATTG ATATAGCGGG CGAAAAAATG GATTTCATAT CCATACATTT ATACGACTTC CCTAATTTTC AAAATACCCA ACGCTACAGA AAAGGCAGCA ATGTTGAGGC CACCTTCGAC ATGCTTGATC ACTACACCAC GCTTACATTA GGCGCACCAC TGCCTTTAAT TGTTTCCGAG TACGGCGCAC CCGATCACGC ATTATTTAAA GCTCCTTGGA CGCCCTACCG CGACGGGTTA AAACTAAAAG CATTAAATTC ACTGTTAATG AGTATGCTAG AGCGCCCTGA CACTTTACTT AAAACTATTC CGTTTATTCC TGTTAAAGCC GAGTGGGGCC GAGATGGTGT ACCGTACAAC GATCGCTTAA TGCGCCAAAA GTTTGAAGCA GAAGGTGAAA CAGGTAACGA GTGGGTATAC ACAGACTTAG TTAAATTTTA CCAACTGTGG GCCGATGTAA ACGGCACCCG GGTAGACAGC TACGCAGCAG ACATGGATAT TTTGGTTGAT AGCTACGTAG ACGGTAGCAC CCTATACCTA ATACTTAACA ACCTTGAATT TAACGACGAA ACATTAACGC TTACCGACCT AGGCCTGAAC AACAATAGCT TTGTTAGCGG CACTATGCGT CATTTACATA CGGTAGATGG CAACCCAGTA CTCAGCGAAT CGGCGCTCGC TAACATACCT ACAAACCTCA CTATCGGGGG CGAAGCTACC ATTGTACTTG CGTTAAACTT CGAAAATGAT ATTGCCATTA GCGAAACCAG TGAAGAAACC AAATACTACG CAACCACCTA TAAGCAAGCC ATAACGGCCA ACACCGATAT TAGCTTTGCC ATTAACAATG TAGCCCTTGG CGATCAAGGT GAAGCAATAT TGCGATTAGG CATAGGCAGA GACCACGGTC TTTCTTTGCA ACCTAGCGTA AGCGTAAACG GCGTAGATGT TGAAGTACCC AGCGATTACC GCGGTTATGA TCAATTCCAT AACGGCACCG GCCGCCCCAA CTTTTACGGT GTAATCGAAA TACCCGTACC TTACAGCGCA TTGCAAACAA GCAATACTGT GGTGGTTAAT TTCCCAGACA GCACAGGCTT TGTAACCACT GCGGCGTTAC AGGTATTTAA TACCTCAACC TCAATTACTC GTCCTATGCA GTAA
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Protein sequence | MITRPYTLLT LTLALLVSLS GCGGGGKSST TDPDPTTPEP QPDTTPASFS FTATTGASLN STTTSNTITV SGINTATTVS VVNGQYAIDN GSFTSAEGTI NNGQTLQVQV TNSANYQTTT TATVTIGGIS ASYSATTMAE PTQGVAIDVN PYIRHSVGGV DSFDRRKFIT IHASNTENDW FGGNDASLGF ANESDDLITE FLEGYDVYFG RDTGGISWHL SQTLEDPAKP GFADEANMTS RGNDTKGWYT VNPSEIAIKQ RQHEHRNTDM IIGSQQHPFW PDGKLTGQGW ALSQTETEAE PFGTATGHYM ANFLAKFYKQ SESDPNGQPK PVYVEVMNEP LYDLVDAATN PTTPEKVFLF HNTVADEIRK LNDDVLIGGY TVAFPDFDSN NFERWENRDK AFIDIAGEKM DFISIHLYDF PNFQNTQRYR KGSNVEATFD MLDHYTTLTL GAPLPLIVSE YGAPDHALFK APWTPYRDGL KLKALNSLLM SMLERPDTLL KTIPFIPVKA EWGRDGVPYN DRLMRQKFEA EGETGNEWVY TDLVKFYQLW ADVNGTRVDS YAADMDILVD SYVDGSTLYL ILNNLEFNDE TLTLTDLGLN NNSFVSGTMR HLHTVDGNPV LSESALANIP TNLTIGGEAT IVLALNFEND IAISETSEET KYYATTYKQA ITANTDISFA INNVALGDQG EAILRLGIGR DHGLSLQPSV SVNGVDVEVP SDYRGYDQFH NGTGRPNFYG VIEIPVPYSA LQTSNTVVVN FPDSTGFVTT AALQVFNTST SITRPMQ
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