Gene Sde_2650 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSde_2650 
Symbol 
ID3968508 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameSaccharophagus degradans 2-40 
KingdomBacteria 
Replicon accessionNC_007912 
Strand
Start bp3352440 
End bp3354803 
Gene Length2364 bp 
Protein Length787 aa 
Translation table11 
GC content47% 
IMG OID637921748 
Productagarase 
Protein accessionYP_528122 
Protein GI90022295 
COG category 
COG ID 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.00000351829 
Plasmid hitchhikingYes 
Plasmid clonabilityhitchhiker 
 

Fosmid Coverage information

Num covering fosmid clones10 
Fosmid unclonability p-value0.0319277 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGATAACTA GACCATACAC ACTACTCACA CTAACGCTTG CATTATTAGT AAGCCTTAGC 
GGCTGTGGCG GGGGCGGTAA ATCCTCCACA ACAGACCCAG ACCCAACCAC GCCAGAGCCA
CAACCCGATA CAACCCCTGC AAGCTTTAGC TTCACAGCTA CAACAGGTGC TTCTCTCAAT
AGCACTACCA CTTCCAACAC CATTACAGTA AGCGGAATTA ACACCGCTAC CACTGTTAGT
GTAGTTAACG GCCAATACGC TATTGATAAC GGCAGTTTTA CCAGCGCCGA AGGCACGATT
AATAACGGCC AAACCCTGCA AGTGCAGGTA ACCAATAGCG CCAATTACCA AACCACGACT
ACGGCCACGG TTACAATTGG CGGAATATCA GCTAGCTACA GCGCCACAAC CATGGCAGAA
CCCACTCAAG GTGTGGCAAT TGATGTAAAC CCCTATATAC GCCATAGCGT GGGCGGCGTA
GATTCTTTCG ACCGCCGCAA ATTTATTACC ATTCACGCAT CGAATACAGA AAATGACTGG
TTTGGCGGCA ACGACGCAAG CCTCGGGTTT GCAAATGAAT CCGACGACCT TATTACTGAG
TTTTTAGAGG GCTACGATGT GTACTTCGGC CGCGATACCG GCGGTATTAG CTGGCATCTT
AGCCAAACAC TAGAAGACCC AGCCAAACCA GGCTTTGCTG ACGAAGCCAA CATGACTTCA
CGCGGTAACG ATACCAAAGG CTGGTACACC GTTAACCCAT CTGAAATTGC CATTAAGCAG
CGTCAGCACG AACATCGCAA TACCGACATG ATTATTGGCA GCCAGCAACA TCCATTCTGG
CCAGATGGTA AATTAACCGG CCAAGGTTGG GCGCTTTCGC AAACCGAGAC CGAAGCTGAA
CCCTTTGGCA CTGCAACCGG CCACTACATG GCAAACTTTT TAGCCAAATT TTATAAGCAA
AGTGAGAGCG ACCCTAACGG CCAGCCCAAA CCTGTATATG TAGAAGTAAT GAACGAACCA
CTCTACGACT TGGTTGATGC CGCCACTAAC CCAACCACCC CCGAAAAAGT TTTCCTATTT
CACAATACCG TTGCAGACGA AATTAGAAAA CTAAACGACG ATGTATTAAT AGGAGGCTAC
ACTGTCGCCT TCCCCGATTT TGATTCCAAT AATTTCGAAC GCTGGGAAAA TAGAGATAAG
GCCTTTATTG ATATAGCGGG CGAAAAAATG GATTTCATAT CCATACATTT ATACGACTTC
CCTAATTTTC AAAATACCCA ACGCTACAGA AAAGGCAGCA ATGTTGAGGC CACCTTCGAC
ATGCTTGATC ACTACACCAC GCTTACATTA GGCGCACCAC TGCCTTTAAT TGTTTCCGAG
TACGGCGCAC CCGATCACGC ATTATTTAAA GCTCCTTGGA CGCCCTACCG CGACGGGTTA
AAACTAAAAG CATTAAATTC ACTGTTAATG AGTATGCTAG AGCGCCCTGA CACTTTACTT
AAAACTATTC CGTTTATTCC TGTTAAAGCC GAGTGGGGCC GAGATGGTGT ACCGTACAAC
GATCGCTTAA TGCGCCAAAA GTTTGAAGCA GAAGGTGAAA CAGGTAACGA GTGGGTATAC
ACAGACTTAG TTAAATTTTA CCAACTGTGG GCCGATGTAA ACGGCACCCG GGTAGACAGC
TACGCAGCAG ACATGGATAT TTTGGTTGAT AGCTACGTAG ACGGTAGCAC CCTATACCTA
ATACTTAACA ACCTTGAATT TAACGACGAA ACATTAACGC TTACCGACCT AGGCCTGAAC
AACAATAGCT TTGTTAGCGG CACTATGCGT CATTTACATA CGGTAGATGG CAACCCAGTA
CTCAGCGAAT CGGCGCTCGC TAACATACCT ACAAACCTCA CTATCGGGGG CGAAGCTACC
ATTGTACTTG CGTTAAACTT CGAAAATGAT ATTGCCATTA GCGAAACCAG TGAAGAAACC
AAATACTACG CAACCACCTA TAAGCAAGCC ATAACGGCCA ACACCGATAT TAGCTTTGCC
ATTAACAATG TAGCCCTTGG CGATCAAGGT GAAGCAATAT TGCGATTAGG CATAGGCAGA
GACCACGGTC TTTCTTTGCA ACCTAGCGTA AGCGTAAACG GCGTAGATGT TGAAGTACCC
AGCGATTACC GCGGTTATGA TCAATTCCAT AACGGCACCG GCCGCCCCAA CTTTTACGGT
GTAATCGAAA TACCCGTACC TTACAGCGCA TTGCAAACAA GCAATACTGT GGTGGTTAAT
TTCCCAGACA GCACAGGCTT TGTAACCACT GCGGCGTTAC AGGTATTTAA TACCTCAACC
TCAATTACTC GTCCTATGCA GTAA
 
Protein sequence
MITRPYTLLT LTLALLVSLS GCGGGGKSST TDPDPTTPEP QPDTTPASFS FTATTGASLN 
STTTSNTITV SGINTATTVS VVNGQYAIDN GSFTSAEGTI NNGQTLQVQV TNSANYQTTT
TATVTIGGIS ASYSATTMAE PTQGVAIDVN PYIRHSVGGV DSFDRRKFIT IHASNTENDW
FGGNDASLGF ANESDDLITE FLEGYDVYFG RDTGGISWHL SQTLEDPAKP GFADEANMTS
RGNDTKGWYT VNPSEIAIKQ RQHEHRNTDM IIGSQQHPFW PDGKLTGQGW ALSQTETEAE
PFGTATGHYM ANFLAKFYKQ SESDPNGQPK PVYVEVMNEP LYDLVDAATN PTTPEKVFLF
HNTVADEIRK LNDDVLIGGY TVAFPDFDSN NFERWENRDK AFIDIAGEKM DFISIHLYDF
PNFQNTQRYR KGSNVEATFD MLDHYTTLTL GAPLPLIVSE YGAPDHALFK APWTPYRDGL
KLKALNSLLM SMLERPDTLL KTIPFIPVKA EWGRDGVPYN DRLMRQKFEA EGETGNEWVY
TDLVKFYQLW ADVNGTRVDS YAADMDILVD SYVDGSTLYL ILNNLEFNDE TLTLTDLGLN
NNSFVSGTMR HLHTVDGNPV LSESALANIP TNLTIGGEAT IVLALNFEND IAISETSEET
KYYATTYKQA ITANTDISFA INNVALGDQG EAILRLGIGR DHGLSLQPSV SVNGVDVEVP
SDYRGYDQFH NGTGRPNFYG VIEIPVPYSA LQTSNTVVVN FPDSTGFVTT AALQVFNTST
SITRPMQ