| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sde_2633 |
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| Symbol | |
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| ID | 3968530 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Saccharophagus degradans 2-40 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007912 |
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| Strand | - |
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| Start bp | 3331475 |
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| End bp | 3332599 |
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| Gene Length | 1125 bp |
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| Protein Length | 374 aa |
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| Translation table | 11 |
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| GC content | 50% |
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| IMG OID | 637921731 |
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| Product | endo-1,4-beta-xylanase |
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| Protein accession | YP_528105 |
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| Protein GI | 90022278 |
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| COG category | [G] Carbohydrate transport and metabolism |
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| COG ID | [COG3693] Beta-1,4-xylanase |
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| TIGRFAM ID | [TIGR01409] Tat (twin-arginine translocation) pathway signal sequence |
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Plasmid Coverage information |
| Num covering plasmid clones | 3 |
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| Plasmid unclonability p-value | 0.00000000112994 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
| Num covering fosmid clones | 15 |
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| Fosmid unclonability p-value | 0.315981 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | GTGAATTGTA CGCGTAGGAA TATAGTAAAA GCAGGCCTTC TTGGCTCGGC ATTCGTCGCC
CTGCCTGCCG TGGCGCGCGC GCTGCCTGGA TTGGCCACGA AATTTCGCGA TCAGTTTTAC
GTGGGCACTG CGGTTAGTGC GCGCTCACTT AATACGCCCA GCGGCGCGTT TGCAGCCACT
GTCGCGCATC AATTCAATGC ACTAACCGCT GAAAACGCCA TGAAGCCCGC CTTACTTCAA
CCACAAATGG GGGAGTGGCG CTGGCAGGAT GCCGATGCCA TTGTGAGATT TGCCGAGCAG
CATCAGATGC TAATGCATGG TCACACCCTT GTGTGGCATT CGCAAACGCC AGATTGGTTC
TTCCAAAACA AGCAGGGCGA ACCGGCAGAC AAAGCAACCC TATACCGCAG GCAAGAGGAG
TATATCAATG CCGTAGTTGG GCGCTATAAA GGGCGGGTAC ACTCGTGGGA TGTGGTGAAT
GAAGCAGAAG ATGAGGGTAA AGGCTGGCGC AAGAGCCACT GGTATAACAT TTGTGGGCCA
GAGTTTATGG AACGAGCCTT TCGCTTAGCT CACGCAGCGG ACCCAAAAGC ACACTTATGT
TACAACGATT ACAATATGCA CTTGCCGCAA AAGCGCGAAT TTTTGGTTAA GTTATTCAAA
GACTACATTA AGCGCGGCGT GCCTATTCAC GGCGTAGGGT TGCAGGGGCA TGTGGGCTTA
GACTACCCCT CGCTGGACGA GTTGGAAAAA ACCATCGTGG CCATGGCCGA TTTAGGTCTA
AAAGTACACA TTACAGAATT GGATGTAGAT GTATTACCCG CGCCATGGCA ACTAGCTAGC
GCAGATATAA GTACTAAATT CGAGTACGAC AAAAGCTTAA ACCCGTACGT TGATGGTTTG
CCTGACGCGG TGAACCAGCA GCTTAGTGCG CGTTATGTAG AGCTATTCAA GCTGTTCATT
AAGCATCAGC AACATATTGG ACGTGTTACG TTCTGGGGCG TCGGTGACGG TGACTCGTGG
AAAAATAACT TTCCGGTACC AGGGCGAACC AATTACCCTT TGTTATTCGA TCGTAATTTG
AAACCAAAGC CTGCTTATAA CGCCTTAGTG GCCCTCAAGT TGTAA
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| Protein sequence | MNCTRRNIVK AGLLGSAFVA LPAVARALPG LATKFRDQFY VGTAVSARSL NTPSGAFAAT
VAHQFNALTA ENAMKPALLQ PQMGEWRWQD ADAIVRFAEQ HQMLMHGHTL VWHSQTPDWF
FQNKQGEPAD KATLYRRQEE YINAVVGRYK GRVHSWDVVN EAEDEGKGWR KSHWYNICGP
EFMERAFRLA HAADPKAHLC YNDYNMHLPQ KREFLVKLFK DYIKRGVPIH GVGLQGHVGL
DYPSLDELEK TIVAMADLGL KVHITELDVD VLPAPWQLAS ADISTKFEYD KSLNPYVDGL
PDAVNQQLSA RYVELFKLFI KHQQHIGRVT FWGVGDGDSW KNNFPVPGRT NYPLLFDRNL
KPKPAYNALV ALKL
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