| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sde_2603 |
|---|
| Symbol | |
|---|
| ID | 3968596 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Saccharophagus degradans 2-40 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007912 |
|---|
| Strand | + |
|---|
| Start bp | 3302193 |
|---|
| End bp | 3303416 |
|---|
| Gene Length | 1224 bp |
|---|
| Protein Length | 407 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 49% |
|---|
| IMG OID | 637921701 |
|---|
| Product | succinyldiaminopimelate transaminase |
|---|
| Protein accession | YP_528075 |
|---|
| Protein GI | 90022248 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG0436] Aspartate/tyrosine/aromatic aminotransferase |
|---|
| TIGRFAM ID | [TIGR03538] succinyldiaminopimelate transaminase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 32 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 22 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAACCCAG ATTTAAGCAA ACTGCAGCCC TACCCGTTTG AAAAACTAAA CGCATTAAAA
GCGACGGTAT CGGCACCGGC AGACAAAAGC CATATTGCAC TTTCTATTGG CGAACCCAAA
CACCAACCAC CTGCATTTGC ACTTAAAGCG CTAACCGATA ACTTGGCGCG CTTCGCCAAC
TACCCCAGCA CCAAAGGCCT GCCTGAGCTG CGCACTGCCA TTGCCAACTG GGCCAATACT
CGCTTTAACT TACAGCGCGC AACGCTAGAT GCAGAAGCAA ACGTATTACC CGTAAACGGT
ACCCGCGAAG CGCTTTTCGC TTTCGCCCAA GCCTGCATAG ATAGCAGCAA AGCAGATGCA
AAAGTACTAA TGCCCAACCC CTTTTACCAA ATTTACGAAG GGGCCGCCTT TTTAGCTGGC
GCGGAACCAG TATTTTTAAA CTGCTTGCCC GAAAACGGTT TTATCCCCGA TTTTGATGCA
ATTAGCGAAC AAACATGGCA AGCGTGCCAG CTATTGTTTA TTTGTACCCC AGGCAACCCC
ACCGGCGCGG TTATGTCGCG CGAGCTGTTA GAAAAACTTA TTGGCCTCGC CGATAAACAC
AATTTCATTA TCGCCAGCGA TGAATGCTAT TCCGAACTGT ATTTCGATGA AGCCAACCCT
CCAACAGGGC TATTGGAAGC GTGCGAATCG CTGGGTAAAA CCGATTTTAA AAACTGCGTG
GTGTTCCACA GCTTATCTAA ACGCTCGAAC CTGCCCGGCT TGCGCTCGGG TTTTGTTGCG
GGCGATGCGC ACATTATCGA CCAGTTTTTT CAGTATCGCA CTTACCACGG TTGCGCCATG
TCTGTGCCCT GCCAACTGGC CAGCATTGCC GCATGGCAAG ATGAAGCCCA CGTGCTAGAG
AACCGAAATT TATATCGCCA AAAATTTGAT GCGGTAATAG AAATACTTAA AGATGTTTTG
CCGGTAAGCA CACCAGATGC CAGCTTTTAT CTATGGCCAA AAACCCCCAT TGCAGATACA
GACTTTGCCC AACAACTATT TGCCCAACAA AACGTAACTG TGCTGCCCGG CCGCTTTTTA
GCGCGCGATT GCGACGGCGT AAACCCAGGC GAAAACTATG TGCGTTTAGC GCTAGTGGCA
GAGCTTGAAG AATGCATAGA AGCCGCACAC CGAATAAAAG CCTTTGTACA AAGTTTAAAC
CAAACTCTAT ATACCAATAG CTAA
|
|---|
| Protein sequence | MNPDLSKLQP YPFEKLNALK ATVSAPADKS HIALSIGEPK HQPPAFALKA LTDNLARFAN
YPSTKGLPEL RTAIANWANT RFNLQRATLD AEANVLPVNG TREALFAFAQ ACIDSSKADA
KVLMPNPFYQ IYEGAAFLAG AEPVFLNCLP ENGFIPDFDA ISEQTWQACQ LLFICTPGNP
TGAVMSRELL EKLIGLADKH NFIIASDECY SELYFDEANP PTGLLEACES LGKTDFKNCV
VFHSLSKRSN LPGLRSGFVA GDAHIIDQFF QYRTYHGCAM SVPCQLASIA AWQDEAHVLE
NRNLYRQKFD AVIEILKDVL PVSTPDASFY LWPKTPIADT DFAQQLFAQQ NVTVLPGRFL
ARDCDGVNPG ENYVRLALVA ELEECIEAAH RIKAFVQSLN QTLYTNS
|
|---|
| |