| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sde_2577 |
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| Symbol | |
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| ID | 3968686 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Saccharophagus degradans 2-40 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007912 |
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| Strand | - |
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| Start bp | 3271610 |
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| End bp | 3273778 |
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| Gene Length | 2169 bp |
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| Protein Length | 722 aa |
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| Translation table | 11 |
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| GC content | 46% |
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| IMG OID | 637921675 |
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| Product | diguanylate cyclase/phosphodiesterase |
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| Protein accession | YP_528049 |
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| Protein GI | 90022222 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG5001] Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain |
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| TIGRFAM ID | [TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 30 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 19 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGCGACTG TGTTTTCAAG CACAACAGGG GTGATTGGTC AGCTCCCCAC TAACAAGCAA
GCGAATGATA GCTCGGCAAA GGATAGTTAT TTCGATCTGG CAGGGATTCT AGATGCCATG
TCCGGGATGG TGTTCTTATT AGATCGCTGG GGTGTGATTC AGCTGGCAAA TAGTCTCGCA
TTAAAATTGT GTAACGGTGA AAATCCCGTT GGCAAAAATG TGATGGAGCT TGATTGTGGC
TGGCAAGATG CCAGTGCGTG CCAGCGCGAT ATTCTATACG TAGTTCGAAG CGGCTTAGCA
AAGCGTGGCT CAGTTGAAAA TATTTTTGTT GAAGGGCAAA TGCGCTGTTA CTGCGTTGAT
ATTGCCCCCG CGAGTAAACA TGCTCACTCC CCAGTAGGTG TTTTTCTTAC GCTTACAGAC
ATTACCCATC AAGAAGACAG TTTACGCGCG CTGCGCGATA GTGAATCGCG CCATAGGGCT
TTCATCGCCA GTAGTGCAGA TGCTATTTGG GCCTATGAGC TTGTGCCACC TGTCGATATC
TCGCTACCCG TTAATCAGCA GGTAGATTTA ATTATGCGCC GGGCACTACT AACAGAGTGC
AATGAAAAAA TGGCGCGTAT ATACGGTGTA TCCGATATAA CCAGTGTGGT TGGTCGGCCC
ATTTACCTTA ATGGTTCCAT GTCCAACAAA GAGGATATAC GGCGTTTTGT ACTCAACAAC
TACCGTGTTG AAGACCACGA GTTTACGCGT ATAGATAAGT TTGGCGAACT GGGGTACATG
TTATCAAGTG CGACGGGCGT GATAGAGAAC GGTAAGCTGA TGCGCGCATG GGGCTCTACA
CGCGATGTGA CAGACCAACG GCGCTATTTG GATCGAATGC GATATCTCGC AAACCATGAT
ACGCTCACCT CCCTGCCGAA TCGTAACTTG TTATACAAAG AATTAGAGCG CGTACTATCC
AATCGCAGCC AAAATCAAAA AGTTGCCCTG TTGCTAGTCG ATTTAGATAG ATTTAAAGAG
ATTAACGACA CCCTTGGCCA TCAAGCTGGC GATAAAGTGC TAAAGCAGTT AGGCCCGCGT
TTAGAGGTTG AGCTTGGCGA CACCCCGGGT ATGGTTGCGC GATTGGGGGG CGATGAATTT
GCTATTTTAC TATCCAATAT TCGCAATCGG CAGCATGCGG TAGTTACCGC GCACAGGTTT
GCCGATGCGA TTGCCGAGCG CTTTGATTTG GATACCTTCA GCACCGAGCT GCAATCGAGT
ATCGGTGTGG TTATTTGCCC AGACCAAGCC GAAGATGTAA GCACGTTGAT GCGCTATGCC
GATGTGGCTA TGTATCACGC AAAAAACAAT ATGAAGGCCG TATCTATTTA CGATGCCGAA
TACGATCCGA ATTCTGCTAA GCGGTTAACG GTTACAGGGG CTTTGGGCAG GGCAATCCGC
GAAGAGCAGT TGGTGCTTTT TTACCAACCA AAAGTGGACT TAAAAACACA CAGAGTTTAT
GGGTTTGAAG CGCTAATTCG TTGGATTCAC CCAGAGCTGG GTTTTATCCC CCCAAGCGAT
TTTGTGCCTA TGGTGGAGTT ATCCAGTTGG ATATACCCCA TGACATTATG GGTGCTGGAA
CAAACAATTA AGCAGTGCGC CATGTGGCGA GATGCGGGGT TGGATTTAAC TCTAGCGATG
AACTTATCGC CGCGCAATTT AGCGGATGAT CGCATTGTTA ACGACTTGGA AGTGCTGCTT
AAAAAGTACA ATGTGCGCGG TGGAATGTTG GAAATGGAAA TTACAGAAAG TATGTTAATG
TCCGACCCCA ATCGTGCTAG CCGCATATTA GAGCGTATAA ATAAACTAGG TGTGCGCTTG
TCGATAGATG ATTTTGGTAC AGGTTATTCT TCGCTAGCGT ACTTAAAACG ATTACCCGTC
AAAACCTTAA AAATTGATGG TTCGTTTATT ATGAATATGC TCGAAAGTGA GCAAGATGAA
ATTATTGTTA AGTCCACTAT TCATTTAGCG CACAACTTAG GTTTAGATGT TGTAGCGGAA
GGAGTGGAAA CCCTAGAGGT ATACGATCGT TTAAATAGTT TGGAGTGTGA TAGCGTGCAA
GGCTATTACA TAGCGAAGCC AATGCCAATT GAAAGTGTTG GCGCTTGGCT TGCAGATTAT
CAGTCTTAG
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| Protein sequence | MATVFSSTTG VIGQLPTNKQ ANDSSAKDSY FDLAGILDAM SGMVFLLDRW GVIQLANSLA
LKLCNGENPV GKNVMELDCG WQDASACQRD ILYVVRSGLA KRGSVENIFV EGQMRCYCVD
IAPASKHAHS PVGVFLTLTD ITHQEDSLRA LRDSESRHRA FIASSADAIW AYELVPPVDI
SLPVNQQVDL IMRRALLTEC NEKMARIYGV SDITSVVGRP IYLNGSMSNK EDIRRFVLNN
YRVEDHEFTR IDKFGELGYM LSSATGVIEN GKLMRAWGST RDVTDQRRYL DRMRYLANHD
TLTSLPNRNL LYKELERVLS NRSQNQKVAL LLVDLDRFKE INDTLGHQAG DKVLKQLGPR
LEVELGDTPG MVARLGGDEF AILLSNIRNR QHAVVTAHRF ADAIAERFDL DTFSTELQSS
IGVVICPDQA EDVSTLMRYA DVAMYHAKNN MKAVSIYDAE YDPNSAKRLT VTGALGRAIR
EEQLVLFYQP KVDLKTHRVY GFEALIRWIH PELGFIPPSD FVPMVELSSW IYPMTLWVLE
QTIKQCAMWR DAGLDLTLAM NLSPRNLADD RIVNDLEVLL KKYNVRGGML EMEITESMLM
SDPNRASRIL ERINKLGVRL SIDDFGTGYS SLAYLKRLPV KTLKIDGSFI MNMLESEQDE
IIVKSTIHLA HNLGLDVVAE GVETLEVYDR LNSLECDSVQ GYYIAKPMPI ESVGAWLADY
QS
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