Gene Sde_2563 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSde_2563 
Symbol 
ID3968672 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameSaccharophagus degradans 2-40 
KingdomBacteria 
Replicon accessionNC_007912 
Strand
Start bp3252735 
End bp3253670 
Gene Length936 bp 
Protein Length311 aa 
Translation table11 
GC content52% 
IMG OID637921661 
Product4-hydroxy-3-methylbut-2-enyl diphosphate reductase 
Protein accessionYP_528035 
Protein GI90022208 
COG category[I] Lipid transport and metabolism
[M] Cell wall/membrane/envelope biogenesis 
COG ID[COG0761] Penicillin tolerance protein 
TIGRFAM ID[TIGR00216] (E)-4-hydroxy-3-methyl-but-2-enyl pyrophosphate reductase (IPP and DMAPP forming) 


Plasmid Coverage information

Num covering plasmid clones37 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones16 
Fosmid unclonability p-value0.56025 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGGAAATAA AATTAGCCAA CCCGCGCGGT TTTTGTGCCG GTGTAGACCG CGCAATTGAT 
ATTGTGAATC GCGCCCTGGA TGTGTTCGGT GCCCCTATAT ATGTGCGTCA CGAAGTTGTA
CACAATAAAT TTGTAGTCGA GCGCTTAAAA GAGCGCGGTG CGATATTTGT GGACGAGCTT
GAAGCCGTGC CAGACGACGT GATCGTCATC TTTAGCGCCC ACGGTGTATC GCAAGCCGTG
CGCCAAGAAG CGGATCGCCG TGGTTTGAAA GTGTTTGATG CCACCTGCCC ACTGGTAACC
AAAGTGCATA TGGAAGTGGC CAAATACAGT AACGATGGTT GCGAGTGTGT GCTGATTGGC
CACGAGGGCC ACCCAGAAGT AGAGGGCACC ATGGGCCAGT ATGATACCGC CAATGGTGGA
GCTATCTACT TGGTGGAAGA CGAGAGCGAC GTAGAGCAGC TAGAGGTACG CGACCCAACG
CGCTTATCTT ACGTTACCCA AACAACGCTT TCGATGGACG ATACCGCGAG GGTTATCGAT
TCGCTGCGCG CCAAATTCCC CCACATTACA GGCCCGCGGA AAGATGATAT TTGCTATGCC
ACCCAAAACC GGCAAGATGC TGTAAAACAG TTGGCCTTAG AGTGCGACCT AGTGCTTGTA
GTGGGCTCTC CCAATAGCTC TAACTCCAAC CGCCTGCGCG AGCTTGCCGA GCGCTGCGGT
ACCGCCGCCT ACCTTATTGA TGGCCCAGAA GACCTAGATA AAAGCTGGTT CGCAAACTGT
AAAAACATCG GCATTACCGC AGGCGCTTCA GCACCAGAGG TATTGGTGAG AGATGTAATA
GAAGGCCTAA AAGCCATTGG TGCATCTGCC CCTGTTGAGT TGCAAGGGCA AGAAGAAAAC
ATCAGCTTTA GTTTGCCCAA AGAGCTGCGC GTATAG
 
Protein sequence
MEIKLANPRG FCAGVDRAID IVNRALDVFG APIYVRHEVV HNKFVVERLK ERGAIFVDEL 
EAVPDDVIVI FSAHGVSQAV RQEADRRGLK VFDATCPLVT KVHMEVAKYS NDGCECVLIG
HEGHPEVEGT MGQYDTANGG AIYLVEDESD VEQLEVRDPT RLSYVTQTTL SMDDTARVID
SLRAKFPHIT GPRKDDICYA TQNRQDAVKQ LALECDLVLV VGSPNSSNSN RLRELAERCG
TAAYLIDGPE DLDKSWFANC KNIGITAGAS APEVLVRDVI EGLKAIGASA PVELQGQEEN
ISFSLPKELR V