Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Sde_2563 |
Symbol | |
ID | 3968672 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Saccharophagus degradans 2-40 |
Kingdom | Bacteria |
Replicon accession | NC_007912 |
Strand | - |
Start bp | 3252735 |
End bp | 3253670 |
Gene Length | 936 bp |
Protein Length | 311 aa |
Translation table | 11 |
GC content | 52% |
IMG OID | 637921661 |
Product | 4-hydroxy-3-methylbut-2-enyl diphosphate reductase |
Protein accession | YP_528035 |
Protein GI | 90022208 |
COG category | [I] Lipid transport and metabolism [M] Cell wall/membrane/envelope biogenesis |
COG ID | [COG0761] Penicillin tolerance protein |
TIGRFAM ID | [TIGR00216] (E)-4-hydroxy-3-methyl-but-2-enyl pyrophosphate reductase (IPP and DMAPP forming) |
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Plasmid Coverage information |
Num covering plasmid clones | 37 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 16 |
Fosmid unclonability p-value | 0.56025 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGGAAATAA AATTAGCCAA CCCGCGCGGT TTTTGTGCCG GTGTAGACCG CGCAATTGAT ATTGTGAATC GCGCCCTGGA TGTGTTCGGT GCCCCTATAT ATGTGCGTCA CGAAGTTGTA CACAATAAAT TTGTAGTCGA GCGCTTAAAA GAGCGCGGTG CGATATTTGT GGACGAGCTT GAAGCCGTGC CAGACGACGT GATCGTCATC TTTAGCGCCC ACGGTGTATC GCAAGCCGTG CGCCAAGAAG CGGATCGCCG TGGTTTGAAA GTGTTTGATG CCACCTGCCC ACTGGTAACC AAAGTGCATA TGGAAGTGGC CAAATACAGT AACGATGGTT GCGAGTGTGT GCTGATTGGC CACGAGGGCC ACCCAGAAGT AGAGGGCACC ATGGGCCAGT ATGATACCGC CAATGGTGGA GCTATCTACT TGGTGGAAGA CGAGAGCGAC GTAGAGCAGC TAGAGGTACG CGACCCAACG CGCTTATCTT ACGTTACCCA AACAACGCTT TCGATGGACG ATACCGCGAG GGTTATCGAT TCGCTGCGCG CCAAATTCCC CCACATTACA GGCCCGCGGA AAGATGATAT TTGCTATGCC ACCCAAAACC GGCAAGATGC TGTAAAACAG TTGGCCTTAG AGTGCGACCT AGTGCTTGTA GTGGGCTCTC CCAATAGCTC TAACTCCAAC CGCCTGCGCG AGCTTGCCGA GCGCTGCGGT ACCGCCGCCT ACCTTATTGA TGGCCCAGAA GACCTAGATA AAAGCTGGTT CGCAAACTGT AAAAACATCG GCATTACCGC AGGCGCTTCA GCACCAGAGG TATTGGTGAG AGATGTAATA GAAGGCCTAA AAGCCATTGG TGCATCTGCC CCTGTTGAGT TGCAAGGGCA AGAAGAAAAC ATCAGCTTTA GTTTGCCCAA AGAGCTGCGC GTATAG
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Protein sequence | MEIKLANPRG FCAGVDRAID IVNRALDVFG APIYVRHEVV HNKFVVERLK ERGAIFVDEL EAVPDDVIVI FSAHGVSQAV RQEADRRGLK VFDATCPLVT KVHMEVAKYS NDGCECVLIG HEGHPEVEGT MGQYDTANGG AIYLVEDESD VEQLEVRDPT RLSYVTQTTL SMDDTARVID SLRAKFPHIT GPRKDDICYA TQNRQDAVKQ LALECDLVLV VGSPNSSNSN RLRELAERCG TAAYLIDGPE DLDKSWFANC KNIGITAGAS APEVLVRDVI EGLKAIGASA PVELQGQEEN ISFSLPKELR V
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