| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sde_2562 |
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| Symbol | |
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| ID | 3968671 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Saccharophagus degradans 2-40 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007912 |
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| Strand | - |
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| Start bp | 3251953 |
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| End bp | 3252567 |
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| Gene Length | 615 bp |
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| Protein Length | 204 aa |
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| Translation table | 11 |
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| GC content | 44% |
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| IMG OID | 637921660 |
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| Product | uridylate kinase |
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| Protein accession | YP_528034 |
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| Protein GI | 90022207 |
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| COG category | [N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG4970] Tfp pilus assembly protein FimT |
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| TIGRFAM ID | [TIGR02532] prepilin-type N-terminal cleavage/methylation domain
[TIGR02596] Verrucomicrobium spinosum paralogous family TIGR02596 |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | 36 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 15 |
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| Fosmid unclonability p-value | 0.378196 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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| |
Sequence |
| Gene sequence | ATGAAAAAGA TTATTCCCCA TTCTGGTTTT ACCCTTTTAG AGTTGATGTT AACGCTCCTC
ATGGCTGCGG TTCTTGTGGC GCTTGCAGCA CCCATGATGG ATTCAACAAT CAAAACTCAG
TCCATTAGAT CATTGCAGCG TGATTTTCAC AGTGCATTAG TATACGCACG CAGTGAAGCT
GTTACTCGCA ATAGGGTGAT TAGTGTTTGT TCTAGTTCTA ATGGTGCATC GTGTAATGCC
GGTGTATGGT CTGATGGATG GATAATTTTT ATTGATAGCA GTACAGCGGG TTTTGGTAAC
GGCGTGTTGG ATAACGGTGA GACTTTACTT CGTGCCAATG TGTATGAGGG AAGCGCTGTT
CCTAGTGTTG TCGATCCAGA TGCAGATGCA GCAGTAAGCT TTGTTACTTT TAGTTTGCGC
GGGTTTACCT ATAACTCCAA TCGGGTATAC GTTCAGATTT GCCCCAGTGA TTCGGAGGAT
TCTTTCGCAA GGGGGCTAAT GTTAGAGCGG TCCGGAAGAG TCGTTTACTC TCGTGATGAT
AATGGCGATG GAGTTCATGA CAGAATTTTT CAAAATGATG CTGGCGTGGC CGTATCAACT
AATTTGGACT GTTAA
|
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| Protein sequence | MKKIIPHSGF TLLELMLTLL MAAVLVALAA PMMDSTIKTQ SIRSLQRDFH SALVYARSEA
VTRNRVISVC SSSNGASCNA GVWSDGWIIF IDSSTAGFGN GVLDNGETLL RANVYEGSAV
PSVVDPDADA AVSFVTFSLR GFTYNSNRVY VQICPSDSED SFARGLMLER SGRVVYSRDD
NGDGVHDRIF QNDAGVAVST NLDC
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