| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sde_2559 |
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| Symbol | |
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| ID | 3968725 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Saccharophagus degradans 2-40 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007912 |
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| Strand | - |
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| Start bp | 3249708 |
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| End bp | 3250349 |
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| Gene Length | 642 bp |
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| Protein Length | 213 aa |
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| Translation table | 11 |
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| GC content | 43% |
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| IMG OID | 637921657 |
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| Product | Tfp pilus assembly protein PilX-like |
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| Protein accession | YP_528031 |
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| Protein GI | 90022204 |
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| COG category | [N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG4726] Tfp pilus assembly protein PilX |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 23 |
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| Plasmid unclonability p-value | 0.0751732 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 14 |
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| Fosmid unclonability p-value | 0.24266 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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| |
Sequence |
| Gene sequence | ATGGCTTCTA CTATTAATGC TAACCATGTA GCTAATCTTT CGAAACCGCA AAGCGGGGCA
GCCTTAATTG TGGCTCTGGT TTTGTTGGCC GCTATTTCGC TTATCGGTGT GGCTAACATG
CAATCCTCTA CGCTAGAAAT GCGAATGGCT GCATCTACCT TTGAGCGAGA AAGATCGTTC
GCTATTGTTG ATGCTGGCTT GCGAGAAGCA GAGCTTAGTT TATCTACGCA AATGAACTTA
AAGCTTGTTG ATTTGCAAAG TGATACATGC ACCACAGGAA AGTGTTTTAC TTCAACCTGT
GCTAATGGGT TATGTTTTGA CGGTGTGTTT GATAGTGGTA TGACCGAAAT AGAGTGCGAA
GTTGCACCTA CCGCAGGCAC AACCGAACGA GTTAAGTTTT GGGAACAAGC CACTTTATGG
TCTACGGCAG GTAAGTATTT AGAGATAGAG GTTCAAGAAA AAATTGTTAA ATATTTTTAC
GAATTTCTAT GTTTCGTTCC AGCGGGAACT GCGCCTTTCA ATGGTGATGA TCCAGCAAAT
TACAACAGCG GTGAGCCACT GTTTCGAATT ACGGCGTACT CAGAAAGTGA GGGCGACCGC
GCTCCTATAA TGTTGCAATC AACAGTAGTT GTTGAGCTGT AA
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| Protein sequence | MASTINANHV ANLSKPQSGA ALIVALVLLA AISLIGVANM QSSTLEMRMA ASTFERERSF
AIVDAGLREA ELSLSTQMNL KLVDLQSDTC TTGKCFTSTC ANGLCFDGVF DSGMTEIECE
VAPTAGTTER VKFWEQATLW STAGKYLEIE VQEKIVKYFY EFLCFVPAGT APFNGDDPAN
YNSGEPLFRI TAYSESEGDR APIMLQSTVV VEL
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