| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sde_2558 |
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| Symbol | |
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| ID | 3968724 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Saccharophagus degradans 2-40 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007912 |
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| Strand | - |
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| Start bp | 3244539 |
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| End bp | 3249683 |
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| Gene Length | 5145 bp |
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| Protein Length | 1714 aa |
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| Translation table | 11 |
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| GC content | 45% |
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| IMG OID | 637921656 |
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| Product | 1-deoxy-D-xylulose 5-phosphate reductoisomerase |
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| Protein accession | YP_528030 |
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| Protein GI | 90022203 |
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| COG category | [N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG3419] Tfp pilus assembly protein, tip-associated adhesin PilY1 |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 5 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 11 |
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| Fosmid unclonability p-value | 0.156102 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCAAATCG TGAAAAGAAA TCGAATCATT AAGTTTGTAA ATTTAATAAG TAAAGCGATG
TTGGCGATAA CGGCGTCTAT TGCTATAAAT GCTAATGCGC AATTGCAAAC AGTCGCAGAT
TTCGATGCGA TCCCTCCTAC CGTTGTAGAC TCAACTACGC CGCTTGTAAT GCTTGTAATG
TCGCGAGATA ACCAGCTCTG GCACAAAGCC TATACGGATT ATACCGATCT TGATGGCGAC
GGCACTATAG ATACTACCTA TAACGATCGA TTCGAGTACT ACGGCTATTT TCGTTCAGAT
CTTTGCTATA CATACGCCAA CGGCATGTTC TCGCCTGCTG CCGAAGTCGC TGAAAACTCG
CACAAGTGTA GCGGTCAGTG GTCTGGTAAC TTTATGAACT GGCTGACCAC AACGCGTATA
GATGTTGTGC GTAAAGTGCT CTACGGTGGT TATCGCTCTA CGGATACAGC CACGTCTACT
GTTTTACAGC GTGCGTTTAT TCCTGCTGAC AACCATGCAT TTGTTAAAGT GGTTGATGCT
TCAAAAATTG ACGGGGTTAT AGCGGATTAT ACGCCTATTA CAGGGTTGTC AGTTGTTAGT
TTTTGTAATG TTACTGATTA CGATGTGGGG GCAAGCGATA TATCTGGCGA TATGTCAGCA
ATTGATAACC CTCCAAAGCT AAAAATGGCT GAAGGAGATC AAAAAGCATG GTCTGGAAGT
GAGCGTAATC AATGCCAATA TTCTGGATCT GGTGGTGAAG GAGGGCGGTC TCAATTCTCA
CCTGGGAGGC CTACTGATTC AGCTATTACA AGTATAGCGT CAGATGGTGA GTTAATTGTT
CGCGTTGAAA CTTGTTCCAC TGCATTGGAC TCGCCAGATG CTAAGAGCTG TAAAGAATAT
GAAGACGATT CGGGTAATAT CGTTCGTAAA CCATATGGCA TTTTACAAAG CTATGGAGAA
ACCGGAGAGT TTAGATTCGG TTTGATGACC GGTAGTTATG AGAAAAAAGA CCGCGGTGGA
GTACTTAGGA AAAATATTGC GCTCATGGGC GGAGTTGATG CTGCAGCCGC AGATTTAGAA
ATAGATTTGG AAACAGGAGT GTTCCTGACG AAAGGCTCTG GTGACCCAGG AATTATTAAT
ACAATCAATC GCCTTCGTAT ACAGGGATGG GACTATGGTG ACACACATTA TGATGATTGT
GATACATACG GCCTTTCAAT TAACAATTTC CTCTCTACTA CTGCTTCGAA TAATAGAAAG
TGTAAAGACT GGGGAAATCC GATTTCGGAG CTCTATGTAG AAGCCCTTAG GTATTTTGCT
GGTGGTTCCG CTAATTCTGC CTATGTTACT GATGATGGTT TTATTCCAAC GGCGGCTTGG
ACAGATCCAT TTAGTGCTGA CGCTCCTTGC TCCAAATGTT CCATTATTGT GCTTTCGACG
GGCTTGAATA ACTTTGATGG TGACTTGTAT ACGAACGCGC TCCCTAATTT GACATCAATT
GAAAATGAAA CGGATTTAGT TGGTATAGCG GAAGGTTTGA ATATAGGGCA ATACGTGGTT
GGTAATGCAA CTGGTGGCAC CGCAGATGAA TGTGACGCTA AATCAATACC TAGTCTAAGT
GCTGCGAGTG GTCCGTGTCC AGAGGTGCCC CGTTTGCAGG GTACCTATAA AATAGCAGGT
GCTTCCTATT ACGCAAAGAA AACTGATTTA CGAACCTCGT TGATCGGTGA ACAAACTGTT
AATACCTATG CTGTTTCACT ATCTGAGACG ATGCCAAGCT TCGATATAAC AACAAGCTCT
GGAGAAAGTG TTAAGTTTGT ACCAACTTGT CAAGCGCATA GTAATGGTAG AAGGAGGGTA
ACGGATAGTG GGTGGACTGC ATGTAGCTTG GTTGATCTAA CTGTAGTGGA TAAGCATGAT
TTTGGGGGGG CACTTCTAAT ATCTTGGGAA GATTCGATGT GGGGTAATGA CTATGATATG
GATGGTTATA TCTATTTTGA ATATTGTACC AAAACTGGTA CCGCAAGCCA GGTTCGAACT
GCATGTCCAA AAGGATTAAA TGAAGATGCA CAAGATGAGT TTGGGAACAA TACAAGCCCA
AGTGCCGTAA TTAATCATTC CAGCGGTGAC TTCACAAACA CCCATATTTC ACATGTTGTG
CCGGAGTGGG ATGAAGCTGC GACGGGTGAA ATTCAAATCC GATTTGCATT GGTGGCTTCC
GCGGGGGGGA ACTCGTTGAA GTTTGGTTAT GTTCTTTTGG GGAGTGATGA TGATGGGGCG
CACGTCAATG AACTTCTCAA AGAAGGTAAT GACAATATTG TATCCACTGC TATTTTTGAT
GGGCCAGACT CGAATCGAAC CATTTGGAGT CGAGATGCTA AAAAGGTAAG AGCTACCCCA
GGAACACCTT CTACACTGGA GAACCCCCTT TGGTATGCTG CAAAATATGG GAACTTTACA
GACTTTAATA ATTCAAGTAC GCCTGACTTA ACCGGTGAGT GGGATGTTCT TAATGTCGAT
GGAACCGTGG GTTCTGATGG GATTCCCGAT GGATATTTTC CAGTGTCAAA TCCAGCAAAT
TTACCTACAG CAATTAAGCG TATTTTCGAT AATTTAAGCG AGCGCGTTTC TGCCGGTAGC
GCAGCGGCAG TGAATGCTCA AACAGGTAGC GGTGAGGGGG CTGTTTACCA AGCCCTTTAT
GCTCCTACAG TTGAGGGAAG TAATGGTGAG GTTAGTTGGG TTGGTTCTAT ACATTCTTTG
TTTATTGACG ATCAGGGTAG AATCAGAGAG GACTCCGCAG CCCCCAAAGC ACAGCTCACC
GATGCTGATA ATGTATTATC TTTTTACTTT GACGATGTGG AGGATGAAAC AAAAATTCAA
CGTTATACCG TGGGTGGTGT AGCAGTAGGA GACCCAATAA CCTTCACCGA TAGTTCATTT
AGCCCCATTT GGTCGGCGAG GGAGCAGTTG GGTGCGGTAA CCGATTATAT TAGTAACCGA
ACTTATACAT CTAACGCTAG TGACGGGCGC TATATATTTA CAAGCTTCGA CCGAGATGGC
GATGGCAATG TAATAAGCCC GGAGTATGAA ACAACAAACT CTGGACCAGG TGTAACAGAC
AAAGCCCACG CATTCGTTGC CTCTAACTTT GCTTTATCTG GCAGTACCGC TACCGATCAC
GGTTATTTAG GTTTAGCTAG TGGCGTAACT GAAGCGTCAG TTGAAAATTT AATAAACTTT
ATTCGCGGCC AAGAAGGGTT GCCCAATTCC AGGTCTCGCT CCATTTATGA TGGTGATGGC
AATGCAACTA AATATTTAAT TGGCGACATT GTGCACTCTA CTCCTGCAAT TGTAGCGAAA
CCTGCGGCAG GCTACCATTT GACTTATAGG GATAGAACCT ATAGGGAATT TGCCGAGCAC
TATCGCGCTA GGCGCAATGT TATTTATGTA GGGGCGAACG ATGGAATGCT ACATGCATTT
AATGCTGGCT TTTTTAATTC TACAAATACA TCGTTTAGTT TAACTGACGC TTCAGGTCGT
GCCACTCCTC ACCCATTGGG CAGTGAGCTT TGGGGCTATG TGCCTTTTAA TTTATTGCCT
CATTTACAGT GGTTGAAATC TGAGCTATAC CCCCATGTGT ATTATATGGA TGGTATTGTA
AAAACTTTTG ATGTAAATAT TTTTGAAGAC GATACTGATC ACCCTGATGG TTGGGGCACA
ATAGTTGTTG CCGGTATGCG TTTTGGTGGC GGTGAATTTT ATGTAGATCA CGATGCCGAT
GAAGGTGAAA CCAACCCAAC AGATAGAATA GCTATGCGTT CTGGTTACGT GATTTTAGAT
GTTACAAACC CGGAAGTTGC ACCAAAACTT ATAGCTGAAA TCACGCACCC AGATTTAGGC
TACAGTGTTT CAGAGCCTGC GCTTATAAAG TACAGAATGC CAAATCCTGA TACAGGTTCT
TACGAGGGTA CCTCTCGAAA TCGTTGGTAC ATTGTATTTG GTTCTGGGCC AGCCGGTGAC
ACCGATGCAG AAAGGCAAGC AGCCCTTGAT GAAGCGGTGA GTAGTAAGAG CGCTAAATTA
TTTGTTTTTG ATCTTAACAA TAAATCTCTT TCTATGAGTG AGTTGACCGA TAACAATGGC
GACCCTGAAT TGGCCAGTTT TGTGGGCGGT GTAGAGTCGG TAGATTGGAC TTCAGATTTT
GTTGACGACG CTATTTATTT CGGGCTGGTT TCGGGTGACG CTGCAACGCC AGGGGGCAAA
CTCAAGCGTG GTAAATTAAG CTTTTCTGAA AGTGGTGATT TGAATATCGA TTTCTCTCGT
GATTTGTTTA ATGGCACTAG CTTGGCGTTC AGCGCGTCGC CTCTGGCATT TAGGGATGTA
AACAATGACT ACTGGGTTTT TGCTGGGACT GGTAGGTATT ATGTCGCAGC AGATAACTTA
TCTACTCAGC AGCAGTCGTT TTTTGGTATT AAAGAACCGA AGGCTTCTGG TATAGCTGCT
TTGAATACAA CTGTGGCAAA TGCCAGTTTG GTAGATACGT CGACTGTAGA TGTATATACC
GATGGGAGAG TCTTTGACGA AGGTGCCGCT GTTACCCTAA CGGCTAATGG TGCCACGCTG
GTGCCGGAAA CCTTTGAAGA TGTTCAGGAG TTTATCGGAG CCCACGGAGG GTGGCGGTTT
GACTTGTACT ATCCTGTTTG GGATATTATT GCGCCGCGTA TGAGGGTTAC AACAAAGGCT
GCTATGGCTG GTAACTCTGT TATTTTCACC GCCTATGATG CGACCGGCGA GTATTGTGAT
TCCGAAGGGA ATGGTTATTT ATTTGCGCCT TATAGCAATG GCGGTGCTCC TGGCCCCTTT
GCCCCAGTTG GGACTGATAG TAGCGATACC ATTAGCGCTG CAGTAAGTGG CGACCCGAAT
GAAGAGCGCG TACTCTGGGG TGTGCCATTG GGTATTGGTG TTCCTTCTAG CCCAATTGTG
ACCAGACCAA GTGCGGATTC TGATAGTGGT GATTCGGGGT GTGATGAGTA TATGGCGCTA
GTACAAAAGT CGACTGGTGA AATTGTTAAT GAAATGCTTG GCTGTGAATC TTACACTTCT
GGTCGTCAAA GCTGGCGTGA AATCCCTGTA ACATGGGAAA TGTAA
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| Protein sequence | MQIVKRNRII KFVNLISKAM LAITASIAIN ANAQLQTVAD FDAIPPTVVD STTPLVMLVM
SRDNQLWHKA YTDYTDLDGD GTIDTTYNDR FEYYGYFRSD LCYTYANGMF SPAAEVAENS
HKCSGQWSGN FMNWLTTTRI DVVRKVLYGG YRSTDTATST VLQRAFIPAD NHAFVKVVDA
SKIDGVIADY TPITGLSVVS FCNVTDYDVG ASDISGDMSA IDNPPKLKMA EGDQKAWSGS
ERNQCQYSGS GGEGGRSQFS PGRPTDSAIT SIASDGELIV RVETCSTALD SPDAKSCKEY
EDDSGNIVRK PYGILQSYGE TGEFRFGLMT GSYEKKDRGG VLRKNIALMG GVDAAAADLE
IDLETGVFLT KGSGDPGIIN TINRLRIQGW DYGDTHYDDC DTYGLSINNF LSTTASNNRK
CKDWGNPISE LYVEALRYFA GGSANSAYVT DDGFIPTAAW TDPFSADAPC SKCSIIVLST
GLNNFDGDLY TNALPNLTSI ENETDLVGIA EGLNIGQYVV GNATGGTADE CDAKSIPSLS
AASGPCPEVP RLQGTYKIAG ASYYAKKTDL RTSLIGEQTV NTYAVSLSET MPSFDITTSS
GESVKFVPTC QAHSNGRRRV TDSGWTACSL VDLTVVDKHD FGGALLISWE DSMWGNDYDM
DGYIYFEYCT KTGTASQVRT ACPKGLNEDA QDEFGNNTSP SAVINHSSGD FTNTHISHVV
PEWDEAATGE IQIRFALVAS AGGNSLKFGY VLLGSDDDGA HVNELLKEGN DNIVSTAIFD
GPDSNRTIWS RDAKKVRATP GTPSTLENPL WYAAKYGNFT DFNNSSTPDL TGEWDVLNVD
GTVGSDGIPD GYFPVSNPAN LPTAIKRIFD NLSERVSAGS AAAVNAQTGS GEGAVYQALY
APTVEGSNGE VSWVGSIHSL FIDDQGRIRE DSAAPKAQLT DADNVLSFYF DDVEDETKIQ
RYTVGGVAVG DPITFTDSSF SPIWSAREQL GAVTDYISNR TYTSNASDGR YIFTSFDRDG
DGNVISPEYE TTNSGPGVTD KAHAFVASNF ALSGSTATDH GYLGLASGVT EASVENLINF
IRGQEGLPNS RSRSIYDGDG NATKYLIGDI VHSTPAIVAK PAAGYHLTYR DRTYREFAEH
YRARRNVIYV GANDGMLHAF NAGFFNSTNT SFSLTDASGR ATPHPLGSEL WGYVPFNLLP
HLQWLKSELY PHVYYMDGIV KTFDVNIFED DTDHPDGWGT IVVAGMRFGG GEFYVDHDAD
EGETNPTDRI AMRSGYVILD VTNPEVAPKL IAEITHPDLG YSVSEPALIK YRMPNPDTGS
YEGTSRNRWY IVFGSGPAGD TDAERQAALD EAVSSKSAKL FVFDLNNKSL SMSELTDNNG
DPELASFVGG VESVDWTSDF VDDAIYFGLV SGDAATPGGK LKRGKLSFSE SGDLNIDFSR
DLFNGTSLAF SASPLAFRDV NNDYWVFAGT GRYYVAADNL STQQQSFFGI KEPKASGIAA
LNTTVANASL VDTSTVDVYT DGRVFDEGAA VTLTANGATL VPETFEDVQE FIGAHGGWRF
DLYYPVWDII APRMRVTTKA AMAGNSVIFT AYDATGEYCD SEGNGYLFAP YSNGGAPGPF
APVGTDSSDT ISAAVSGDPN EERVLWGVPL GIGVPSSPIV TRPSADSDSG DSGCDEYMAL
VQKSTGEIVN EMLGCESYTS GRQSWREIPV TWEM
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