| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sde_2553 |
|---|
| Symbol | |
|---|
| ID | 3968719 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Saccharophagus degradans 2-40 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007912 |
|---|
| Strand | - |
|---|
| Start bp | 3238630 |
|---|
| End bp | 3240252 |
|---|
| Gene Length | 1623 bp |
|---|
| Protein Length | 540 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 48% |
|---|
| IMG OID | 637921651 |
|---|
| Product | Beta-hydroxyacyl-(acyl-carrier-protein) dehydratase FabZ |
|---|
| Protein accession | YP_528025 |
|---|
| Protein GI | 90022198 |
|---|
| COG category | [H] Coenzyme transport and metabolism
[R] General function prediction only |
|---|
| COG ID | [COG0171] NAD synthase
[COG0388] Predicted amidohydrolase |
|---|
| TIGRFAM ID | [TIGR00552] NAD+ synthetase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 32 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 10 |
|---|
| Fosmid unclonability p-value | 0.0396005 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGTCAACAC TAAACATTGC GCTTGCGCAG ATAAACCCGC TAGTAGGGGA TATAGACGGC
AATACTCAGC TTATTATCGA TGAGGCGCTG GCACTTGCGA ACAAGCACGA TGTGATTGTG
TTTCCTGAGT TGACTTTAAC TGGTTATCCG CCAGAGGATT TGCTGCTACG CCCTAGCATT
GCATTGCGCG TAGATCGAGC AATTCAACAA ATATTAGACT CAAATATTTC TGCTGCGGTG
GTTGTGGGCT ACCCCAAACG CGAAGGCGGG AAGCTATTTA ATATGGCTGG TGTATTGGCG
CAGGGGCAAG TCCTATTTGA ATACGCAAAA CAGTGCTTGC CTAATTATCA GGTATTTGAC
GAAAAGCGCT ACTTCGAAGC GGGTAGCAAG CCTGGGGTAT TCCAACTAAA CGGTGTGAAT
TTGGGCTTAT CCATTTGCGA AGATATATGG GATGGCTCTC CCTTGGATCA ATTGCAAAGC
GCAGATGTGC ATGCAGTGCT CAATTTAAAC GCTTCACCTT TTCATCAAGA AAAGCAAGCA
GAGCGCGAAG CACTAATTGC AGCTCGAGCC AAAAAACTAG GTGCGCCAAT TTTGTATGTA
AACCAGGTTG GTGGCCAAGA TGAATTGGTA TTTGATGGTG GCTCCATGGT TGCCACCGCA
CAGGGCGAAA TAGTGGGGCG TACGGAGTTA TTCAAAAACG CCTGCTTGAG TGTTGAGCTA
GATACCGCTA CTAAGCAGGT ATCGCCACAG GCAAGTAAGA GTGGTCACCC TGCAGACCCA
TTGGCCGATA CCTATGAAGC CCTTGTGGTT GGTGTGCGCG ATTACGTTAA TAAAAATCGT
TTTAAAGGGG TTGTACTGGG TTTATCCGGC GGTATCGATT CCGCGCTAAC CTTGGCTATT
GCTGTAGATG CTTTAGGTAA AGAGCGGGTA GAAGCGGTAA TGATGCCCTT TAAATACACC
TCTCAGTTAA GTTTAGATGG CGCCGAAGAC GAAGCACGTA GATTGGGGGT TAAGTACCGC
GTTATCCATA TAGAACCCAT GTACGATGCG TTTACGCAGG CATTAAACGA GGCGTTTGAA
GGCCAACAAA AAGATACAAC CGAAGAAAAC ATTCAAGCTC GCTCGCGTGG TGTGTTGCTA
ATGGCTCTGT CGAATAAGCT AGGGTATTTG GTACTTACAA CAGGCAACAA AAGCGAAATG
GCTGTGGGTT ACGCCACACT GTATGGTGAT ATGGCGGGCG GCTTAGATGT ACTTAAAGAT
GTGCCTAAAA CCCAAGTGTT CGCACTTTCG CGCTATCGCA ATACATTGGG CGAGGTGATA
CCGCCCGCGG TAATAGATCG CCCGCCGTCA GCCGAATTGG CGCCAGACCA AAAAGACGAA
GACTCTTTGC CGCCCTATGA AATACTCGAC CAAATACTCG AACTGTATAT CGAGCAAGAT
GAAAGTGCAG AAAGTATAGT GGCAAAGGGC TTTGATAAAG AGCAGGTTTA CCGCGTTTTA
CGCCTAGTGG ATTTAAACGA ATACAAACGC AGGCAGGCGC CGGTAGGCAT TCGTATTAGC
AAGCGCGCCT TTGGCCGAGA TAGACGTTAC CCCATTACAA ATGGTTGGAA AGTGGGGGAT
TAG
|
|---|
| Protein sequence | MSTLNIALAQ INPLVGDIDG NTQLIIDEAL ALANKHDVIV FPELTLTGYP PEDLLLRPSI
ALRVDRAIQQ ILDSNISAAV VVGYPKREGG KLFNMAGVLA QGQVLFEYAK QCLPNYQVFD
EKRYFEAGSK PGVFQLNGVN LGLSICEDIW DGSPLDQLQS ADVHAVLNLN ASPFHQEKQA
EREALIAARA KKLGAPILYV NQVGGQDELV FDGGSMVATA QGEIVGRTEL FKNACLSVEL
DTATKQVSPQ ASKSGHPADP LADTYEALVV GVRDYVNKNR FKGVVLGLSG GIDSALTLAI
AVDALGKERV EAVMMPFKYT SQLSLDGAED EARRLGVKYR VIHIEPMYDA FTQALNEAFE
GQQKDTTEEN IQARSRGVLL MALSNKLGYL VLTTGNKSEM AVGYATLYGD MAGGLDVLKD
VPKTQVFALS RYRNTLGEVI PPAVIDRPPS AELAPDQKDE DSLPPYEILD QILELYIEQD
ESAESIVAKG FDKEQVYRVL RLVDLNEYKR RQAPVGIRIS KRAFGRDRRY PITNGWKVGD
|
|---|
| |