| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sde_2548 |
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| Symbol | |
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| ID | 3968714 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Saccharophagus degradans 2-40 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007912 |
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| Strand | - |
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| Start bp | 3231880 |
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| End bp | 3234510 |
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| Gene Length | 2631 bp |
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| Protein Length | 876 aa |
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| Translation table | 11 |
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| GC content | 48% |
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| IMG OID | 637921646 |
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| Product | ClpB protein |
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| Protein accession | YP_528020 |
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| Protein GI | 90022193 |
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| COG category | [O] Posttranslational modification, protein turnover, chaperones |
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| COG ID | [COG0542] ATPases with chaperone activity, ATP-binding subunit |
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| TIGRFAM ID | [TIGR03346] ATP-dependent chaperone ClpB |
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Plasmid Coverage information |
| Num covering plasmid clones | 18 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 6 |
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| Fosmid unclonability p-value | 0.00184883 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | ATGAGAATTG ATCGATTAAC TAACCAACTT CAAGTTGCCT TGTCGGATGC TCAATCTCTG
GCCGTTGGCC GCGATCATTC GCAAATTGAA TCCATACACC TTATGCAGGC CATGCTAGAC
CAGCAAGGTG GTGCAGTGCG GCCGCTATTA GCTCGCGCGG GTTTTGATGT GCCCGGTTTG
CGCAACGAAT TAACCAAGCA GCTAGAAGCG CTGGCAACCG TAACTAATCC AACCGGCGAT
GTGAACATGT CGCAGGAGTT GGGGCGCTTA CTAAACCTTG CAGACAAATA CGCGCAGAAA
GTGGGCGATA AATTTATCTC TAGCGAAGCG GTGTTGTTTG CCGGCATTTC AGATAAAGCC
AGCAACTTAG GTAAATTACT TAATACATAC GGCCAGCCAG ACAGGTTAAA GCAAGCTATA
GCCGCCGTAC GCGGCGGTGA AACCGTGGAC GACCCCGAGG CCGAAGGTAA CCGTCAAGCT
TTAGAGAAAT TCACAGTGGA CCTTACTGCG CGTGCAGAGG CCGGTAAGCT CGACCCCGTT
ATTGGTAGAG ACGATGAAAT CCGTCGCACA ATTCAAGTGT TGCAGCGCCG CACCAAAAAT
AACCCTGTGC TAATAGGTGA GCCCGGTGTA GGTAAAACCG CCATTGTAGA AGGCTTGGCG
CAACGCATTA TTAATGGCGA GGTGCCAGAA GGCCTAAAAA ATAAACGTTT ATTATCGTTA
GATTTAGGCT CGCTGTTGGC GGGCGCAAAA TTTCGCGGTG AATTTGAAGA GCGTTTAAAA
GCTGTGCTTA ATGAGCTTTC CAAGCAAGAA GGGCGCATTA TTTTATTCGT AGATGAGTTG
CACACCATGG TGGGGGCGGG TAAAGCCGAC GGCGCTATGG ATGCAGGTAA TATGCTAAAA
CCAGCGCTGG CGCGTGGTGA GTTACATTGC GTGGGCGCAA CAACGCTAGA TGAATATCGC
CAATATATTG AAAAAGATGC TGCCCTTGAG CGCCGCTTCC AAAAAGTACA AGTGGATGAG
CCAAACGAAG AAGACACCAT CGCTATTTTG CGCGGGTTAA AAGAGCGCTA TGAGGTTCAT
CACGGTGTAA ATATTACAGA TTCCGCCATT ATTGCTGCGG CGAAATTGTC GCAACGCTAT
ATCACCGATA GACAACTGCC CGATAAAGCA ATTGATTTAA TTGATGAATC CGCTAGCCGT
ATTCGCATGG AAATTGACTC CAAACCGGAG GAAATGGACA AGCTAGAGCG CCGCTTAATT
CAATTAAAAA TTGAGCGCGA AGCGGTTAAA AAAGATGAAG ACATCGCCTC TAAAGAACGA
CTCAAAAAAA TAGACAGTCA AATTAATGAA ATAGAAAAAT CGTTTGCAGA TTTAGATGAA
ATTTGGCGGG CAGAAAAAGC CGCGCTGCAG GGGTCGCAAG AAATTAAATC GCATTTAGAA
AAGGCGCGAT TAGACCTAGA AGCCGCGCGT CGCGCTGGCG ATTTAGGGCG CATGTCTGAA
TTGCAGTACG GCATTATTCC AGATTTAGAA AAACAACTAG ATATGGCCGC GCAAGCCGAT
ATGCATGAAA TGAAATTATT GCGCAACAAG GTTACCGAAG AAGAAATTGC GGAAGTAGTG
TCCAAATGGA CGGGTATTCC GGTTTCTAAA ATGCTAGAGG GTGAGCGCGA TAAACTATTG
CGTATGGAAG ACGATTTGCA CAAGCGTGTA ATTGGTCAGC ACGAGTCTGT TGTGGCTGTC
TCTAACGCTG TTCGCCGTTC GCGCGCAGGC CTTTCTGACC CGAACCGCCC CAATGGATCA
TTTTTGTTTT TAGGCCCTAC AGGTGTAGGT AAAACCGAGT TGTGCAAAGC GTTGGCAGAG
TTTTTATTCG ACAGCCAAGA TGCCATGGTA CGCATTGATA TGTCGGAATT TATGGAGAAA
CACTCCGTTG CCCGTTTAAT TGGTGCGCCC CCTGGGTACG TAGGTTACGA AGAGGGCGGC
TACTTAACCG AGGCGGTGCG CCGCAAGCCC TATTCGCTCG TATTGCTAGA TGAAATTGAA
AAAGCGCATC CAGACGTATT CAATATTTTG TTGCAAGTAT TAGAAGATGG CCGCTTAACG
GATGGCCAAG GTAGAACTGT CGACTTCCGC AACACGGTGG TTGTAATGAC GTCGAACCTA
GGCTCCAGTG CCATTCAAGA TATTGCGCAA AATAAATCTT TCGATACGAT CAGTTTCGAT
AACGAATCTG GTGCCGAGGA GCAGAACCAA TACCGTTACC AAGCTATGAA AGATGCGGTA
ATGGAGGTGG TAACAGGTCA CTTCCGCCCA GAATTTATCA ATCGTATCGA TGAGGCTGTA
GTGTTCCACC CATTGGCACA GCAGCAAATA GCGGGCATTG CCGATATACA ACTGGAAACA
TTACGCAAGC GCTTGGCAGA AAGAGATTTA CGCTTGAACG TAACACCAGA AGTAATGGCG
AAGCTGGCGG AGGCGGGCTT CGACCCTGTA TACGGCGCAA GGCCGCTAAA AAGAGCTATA
CAACAGTTGG TAGAAAACCC CTTGGCGCAA CATATATTGA AAGGGGAGTT TATCGCTGGT
GACACCATCA GCGCCACGCT TGAAGAAGGT GAAATTACCT TTAGAAAGTA A
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| Protein sequence | MRIDRLTNQL QVALSDAQSL AVGRDHSQIE SIHLMQAMLD QQGGAVRPLL ARAGFDVPGL
RNELTKQLEA LATVTNPTGD VNMSQELGRL LNLADKYAQK VGDKFISSEA VLFAGISDKA
SNLGKLLNTY GQPDRLKQAI AAVRGGETVD DPEAEGNRQA LEKFTVDLTA RAEAGKLDPV
IGRDDEIRRT IQVLQRRTKN NPVLIGEPGV GKTAIVEGLA QRIINGEVPE GLKNKRLLSL
DLGSLLAGAK FRGEFEERLK AVLNELSKQE GRIILFVDEL HTMVGAGKAD GAMDAGNMLK
PALARGELHC VGATTLDEYR QYIEKDAALE RRFQKVQVDE PNEEDTIAIL RGLKERYEVH
HGVNITDSAI IAAAKLSQRY ITDRQLPDKA IDLIDESASR IRMEIDSKPE EMDKLERRLI
QLKIEREAVK KDEDIASKER LKKIDSQINE IEKSFADLDE IWRAEKAALQ GSQEIKSHLE
KARLDLEAAR RAGDLGRMSE LQYGIIPDLE KQLDMAAQAD MHEMKLLRNK VTEEEIAEVV
SKWTGIPVSK MLEGERDKLL RMEDDLHKRV IGQHESVVAV SNAVRRSRAG LSDPNRPNGS
FLFLGPTGVG KTELCKALAE FLFDSQDAMV RIDMSEFMEK HSVARLIGAP PGYVGYEEGG
YLTEAVRRKP YSLVLLDEIE KAHPDVFNIL LQVLEDGRLT DGQGRTVDFR NTVVVMTSNL
GSSAIQDIAQ NKSFDTISFD NESGAEEQNQ YRYQAMKDAV MEVVTGHFRP EFINRIDEAV
VFHPLAQQQI AGIADIQLET LRKRLAERDL RLNVTPEVMA KLAEAGFDPV YGARPLKRAI
QQLVENPLAQ HILKGEFIAG DTISATLEEG EITFRK
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