| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sde_2542 |
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| Symbol | |
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| ID | 3968742 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Saccharophagus degradans 2-40 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007912 |
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| Strand | - |
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| Start bp | 3221375 |
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| End bp | 3224521 |
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| Gene Length | 3147 bp |
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| Protein Length | 1048 aa |
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| Translation table | 11 |
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| GC content | 45% |
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| IMG OID | 637921640 |
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| Product | TonB-dependent receptor |
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| Protein accession | YP_528014 |
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| Protein GI | 90022187 |
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| COG category | [P] Inorganic ion transport and metabolism |
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| COG ID | [COG4771] Outer membrane receptor for ferrienterochelin and colicins |
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| TIGRFAM ID | [TIGR01782] TonB-dependent receptor |
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Plasmid Coverage information |
| Num covering plasmid clones | 1 |
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| Plasmid unclonability p-value | 0.000765383 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
| Num covering fosmid clones | 2 |
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| Fosmid unclonability p-value | 0.00000552533 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | decreased coverage |
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Sequence |
| Gene sequence | ATGACGTTCA CCAGCGGTAT CCAGCATAAG AAAAAACTAC TGGCGATGCT AATAAGCTGC
GCGCTCTACA ACACCTCTGC CTTGGCGCAA GAGGAAGACA CTAGCACAGT GGAAGACGAC
GCAAACCTAG AAGAGGTTAT CGTCACCGGC GTTCGCGCCT CCCAAGCCAA AGCTATTGAT
ATTAAACGCA ACTCTGCCAA CGTAGTGGAC TCTATTGTTG CGGAAGATAT TGGTAAGTTG
CCAGATACAA CCATTACTGA TTCGCTTCAA CGTGTAACCG GTGTGCAAAT TACTCGCTCA
GCGGGTGAAG GTACATCGCT AAATATTCGT GGTATGCCAC AGGTTCTCAC AACCTTGAAC
GGCGAACAAT TCCTAAGCCC TTGGGCAATT ACTGGTGTGC AAGCGAACTA TTCTGATGTG
CCAGCAGGCA TGATTAGTGG CGCCGACGTA TATAAATCGC AATCTGCAAA CGTACTTGCA
GGCGGTATTT CAGGGGTTGT GGATTTAAAA ACGTTGGACC CAACAAGTTT AGACGCGGGT
TTTACTGGCA AGCTGCGCAT TGAAGGCGCG ACCGGATCTA GATCTAAAGA TAAATACGAA
GAAGATGGCT CGAAAAGTAC TCGTGCCCCC GACCATAGCG TGAGCTTGGT GCTTGGCTTT
AATGACGATG ATCGCTTTTC CGTAGTCACA AACCTATATA CAGCCAATTC ATACGCTGCA
AATTATTCAA TGTACGAAGA CCAGCGTTTG GCCTTTTTAG ATGGTCAAGG CGGTACGCCT
AGTGACCCTT ACGATTTAGA TGGCGACGGT GATTTAGTTA ATGATTGGTA TATAGTGCCT
GGGGAGTACG GTGCTAGCAG TAGTTTTGTG GAGCGTGATC GTACTGGTGG TTCTATTTCT
TCCGAATTTG TCATCAATGA TAACTGGTCG GTTCGCGGCG ATATTTTTTA CACCGCAATG
GAACAGTACA ACCGTGGAGT AAAAGCGGGC TTTAACGGTA AATCTACTCC CGAGTCATTC
CAGGCGGATG CTGATGCTGC GCTGTATCAA ACAGATGTGT ACAACACTTT GCAGCCAAAT
TCTATTGTTG GTGAAGGTTC GACTATTTCG TTTGTAGACT CCGATGGCGT CACGCAATAT
AGAGATTTGC ATACTCTGCA AGTGGCTGAG GTATGGGCCG CAGATTTCCA AACATCATCT
ACTAATGAAA TAGATAAAAC TGCAGCGTTA AATACCAATT TAGAATTTAA CTACACCAAT
AACGACAATA TCGATGCATC GGTTCGCGCT ATATATGCCA AAGCCGAAAA GCAATATCGT
AAAGCGACGT TTCAGCAGGG TACACCTGCG TGGCTTTGGG TCGATGAAAA CGGTGTTCCA
GGGAAAGATC CTATCGATGG TTACCATGTA ACTGTAGATT ACCGCGGTGA TATGCCTGCG
TTCAGTTTCA CAGATGATTT ATCTAATGCC AGTTTATTAA AACAGTACCA AGGGTTTGCT
GATGGCGCGA ACACAGATGC AACACTTGGC GCTCTTCGTG GCGATATTAA ATTAGCGTTA
GATGGCGATT TTATTCAATC GGTATCTGGC GGTGTGCGAT ATAGCGAGCG CGAAGCAAAT
CATAATAAAT TCTATTATGT AACGCGTACA GGGCGTTACA CAGATTGGGA AGACCCTCGA
GTGCCGGTGG ATAAGCGCTA CCGGTTATTG CCAGGTAATT TAATTTGGCA AAAATACCCT
AACTGGTTGA AGTTTGATTA TGCAGAGACA AACCCTAGTC TAATTGATAT AGGCGGACTA
GAAGACAATG GTTTCTCCGC AGCAGACACA ACCGCGTTTA GAGATTTTGG CCCAATCAAA
GGTTTTGAAG CTGGCGTTGC ATCTTTGGAC CCGGCCGATT GGGATAATCC CTATGAGTTT
ATGAACCGCC TGTACCCTGG TACTCAAACC GCAAGCGACC CTGGTTACAC ATACTCTGTT
AAAGAGGCGT CAATCAATAC CTACGCGCAG CTTGATTTTG GTAACGAGAG CGAAGGGCTA
TTTGGCATTC CATATCAAGG TAATGTCGGT TTGCAAGTTG TTACTGTCGA CCGAACAGTA
GAACAAATAG TTGTGCCAGA GGCTTTGGAT TCATTTAACT CCATTGGTTA TGACGATTGG
CAAAAAATTG CTTTTGTTTC TGAAGTGGCT ACACATGAAA ACTCTCAAAC TGAGCTTTTG
CCGTCAATAA ATTTAAATTT ATTCCCTCGC GACGATGTGA TATTGCGTGT TGGTGCATCT
AAAACTATGA CCCGTAACGA TCTTGAAAAT GTGGGTTCTA GTTTGGCGCT GTGGTATCAA
CAGTGTCCTA AAACCGATGA GAATGGCGAG CCTGTAATGG TGCTAAACCC ATCCAACGGT
ACACAGGTGC AAGATACTGT AGGGTGTATT GGTGGTGGTA GTGATAATGG CCAGCCAGAC
ATCAAGCCTT GGACCGCTAC CGTATTTAAT ACGTCTGCAG AATGGTATTT CGATGAAAAT
GCCATCCTAG GTTTAGGTGT GTTTTTAATT AAGGTTGATA GTTCTGTAGA AAGCTTTCAA
GAGCAGCGTC CATTTGTAGA TTTAGATGGT ATCGACCGCG ACCGTGTAGC TAATGTTTGG
ACGACTAGAA ACGTTGGTGC TTCCGACTTA TTTGGTGCTG AGCTAGGTTA CAAGCAGCCG
TTTACTTTCT TACCTGGTGA GTTCTTAAGT TCTACTGGGG TAGAATTTAA CTACACCTAT
TCTGATAGTG AGTCGGGCGG TGAGGATGTG GAAGGCAATG CTTTCCCGTT GCCATCAAAC
TCGCAACACC AATCTAACTT CATTTTGTGG TACGACAGAG CAGGGTTGAA TGTTCGTTTG
GCGTATAACT GGCGCAGTGA AGAGTACCTT GGCCGTGTAG GCGTGAATTC TAACGCTGCG
GTTATGGAGC TTGGTCAGTG GTTAGAGCCT GCTGGTTACT TAGATCTTTC TGTGAATTAT
TGGGTGAACG AGCACCTTAA CTTTTTCGCG AGCGGCAACA ACTTAACAGA GCAAAGTAGA
AAAAGTTATG CCCAATACGA AGGGCAATTT CACTCTCTAT GGGTACAGGA AACACGTTAC
AGCATAGGTG TAAATCTATC GCTTTAA
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| Protein sequence | MTFTSGIQHK KKLLAMLISC ALYNTSALAQ EEDTSTVEDD ANLEEVIVTG VRASQAKAID
IKRNSANVVD SIVAEDIGKL PDTTITDSLQ RVTGVQITRS AGEGTSLNIR GMPQVLTTLN
GEQFLSPWAI TGVQANYSDV PAGMISGADV YKSQSANVLA GGISGVVDLK TLDPTSLDAG
FTGKLRIEGA TGSRSKDKYE EDGSKSTRAP DHSVSLVLGF NDDDRFSVVT NLYTANSYAA
NYSMYEDQRL AFLDGQGGTP SDPYDLDGDG DLVNDWYIVP GEYGASSSFV ERDRTGGSIS
SEFVINDNWS VRGDIFYTAM EQYNRGVKAG FNGKSTPESF QADADAALYQ TDVYNTLQPN
SIVGEGSTIS FVDSDGVTQY RDLHTLQVAE VWAADFQTSS TNEIDKTAAL NTNLEFNYTN
NDNIDASVRA IYAKAEKQYR KATFQQGTPA WLWVDENGVP GKDPIDGYHV TVDYRGDMPA
FSFTDDLSNA SLLKQYQGFA DGANTDATLG ALRGDIKLAL DGDFIQSVSG GVRYSEREAN
HNKFYYVTRT GRYTDWEDPR VPVDKRYRLL PGNLIWQKYP NWLKFDYAET NPSLIDIGGL
EDNGFSAADT TAFRDFGPIK GFEAGVASLD PADWDNPYEF MNRLYPGTQT ASDPGYTYSV
KEASINTYAQ LDFGNESEGL FGIPYQGNVG LQVVTVDRTV EQIVVPEALD SFNSIGYDDW
QKIAFVSEVA THENSQTELL PSINLNLFPR DDVILRVGAS KTMTRNDLEN VGSSLALWYQ
QCPKTDENGE PVMVLNPSNG TQVQDTVGCI GGGSDNGQPD IKPWTATVFN TSAEWYFDEN
AILGLGVFLI KVDSSVESFQ EQRPFVDLDG IDRDRVANVW TTRNVGASDL FGAELGYKQP
FTFLPGEFLS STGVEFNYTY SDSESGGEDV EGNAFPLPSN SQHQSNFILW YDRAGLNVRL
AYNWRSEEYL GRVGVNSNAA VMELGQWLEP AGYLDLSVNY WVNEHLNFFA SGNNLTEQSR
KSYAQYEGQF HSLWVQETRY SIGVNLSL
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