| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sde_2502 |
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| Symbol | |
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| ID | 3968784 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Saccharophagus degradans 2-40 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007912 |
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| Strand | - |
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| Start bp | 3167785 |
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| End bp | 3170691 |
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| Gene Length | 2907 bp |
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| Protein Length | 968 aa |
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| Translation table | 11 |
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| GC content | 45% |
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| IMG OID | 637921593 |
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| Product | crossover junction endodeoxyribonuclease RuvC |
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| Protein accession | YP_527974 |
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| Protein GI | 90022147 |
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| COG category | [P] Inorganic ion transport and metabolism |
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| COG ID | [COG1629] Outer membrane receptor proteins, mostly Fe transport |
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| TIGRFAM ID | [TIGR01782] TonB-dependent receptor |
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Plasmid Coverage information |
| Num covering plasmid clones | 4 |
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| Plasmid unclonability p-value | 0.0144507 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 23 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGTGTGTAA TGGGGGTGGT TAACCCTGTT CATGCGCAAG AACAAGAAAC AAAAGAGTTA
GAAGAGGTAA TTGTTACCGG TATGCGCCAA AGTATTTTGA GTGCGCAACA AATTAAACGC
GATTCGAATG TAGTTGTAGA TTCAATCGTA GCGGAAGATA TAGGCAAGCT ACCAGATCGC
AGTGTAACCG AAGCACTGGC GCGTATACCG GGCATTAGTG TTTCCCGTTA CGAAGACCTT
GGTGACCCAG AGCATTTTGC TGGCGAAGGC TCTGGTGTCT TAGTGCGCGG TATGTCGCAG
GTTCGCGGTG AATTAAACGG CAGAGAAATA TTCTCTGCTG ATGGTGGTCG GGGTCTTAGT
TTTGATGATG TTCCCGCAGA GTTAATGAGT GGTGTGGATG TATATAAAAG CCCATCGGCA
GATATGATTG AAGGCGGCTT AGGTGGTGTA GTGAATTTGC GTACACGCTT GCCTTTCGAT
TCAGATGGTC AACTTATTAG TGCCACATTA AAAGGTAACT ACGGCGATTT AATCGACGAA
GCGAACCCCG AATATTCTGC TTTGTATAGT AACCGCTGGG ATACCGATGC TGGTGAAATA
GGTTTTTTGG TGGACGTATC TTCCTCCAAG TTGGCGAGCC GCGCAGACAA TATTTACACC
AGAGCATTTT TGCCGCGAAC AGACTTAGAC GTGGATGGCT TTGATACAGT GTACGTACCT
AAAGGTGTGG ATTGGCGTAG AAACGACTAC GAAAGAAAAC GCACCGGTGC ATATGTGGCT
GTTCAGTGGG CGCCAAATGC CGATGTAGAA TTTACCTATA CCGGGTTTAC AAGCACGCAT
AAAAGTCGGT GGGACGAAAA CGCCTTTTTT ATTGACTCGG GTGCAGATTC AAACTTGTTC
TTAACATCAC AGTCAACATC CGAAGGCGCG CAGCCGTGGG TGTTTGATGA TGGTGGTTCG
TTAGTAAGCG GCACCATCAC CACTGCGCAC AATAATTTCG GTAGCACAGA TTTCACTACC
GATAATACAT TTGGTGTACC TTTTGGTACC AGTAGCCGTT ATTCCGCAAG TGATGCAACC
ACCACAGATC ACTCTTTGGC GGCTATGTGG CAGGTATCAG ACCGATTAAA AATATCTTCA
AGCTTGCAAA TGGTTGATTC AACGGCCGAC GTTGATGACA ACACATTAGG CTTAATTACC
TTCCCAGATG AAATTACGGT GAGTGGTTTG AATGGCACTC CCTCAATAAC AGCGGGCGGC
TTTTTAGATA ACTTGAATAA TTATTCGCAT GGTCAATCTA TGGTTATGCG CAAGAAAAAC
GAAGCTAAAT CTAAGGCGTT GCGTATTGAT GCGGAATACG ACTTTGAAGA TTCAATCGTT
AGTTCTGTTA AAGCGGGTGT GCGCTTTACG GATAAATCTG CCTACAACGC CGGTGGCGAT
TACAACTGGT CAGCGCGTTA CCAGCCTTGG CAAATAGGCT CCGAAGATTG GCGTCCATTT
AACCACACAG ATGATTTTCC GCGTTTACAG AACGAAAACT TTGTTAAATA CATCGAGTTT
GATAATTTTC AACGCGGTGG TACTGCAGTG CCCAGTTCAG CTTACTTAAT TGATCACTCC
TTATTGCAAG ACATGGAAGC CACAACCGCA GCCATAGATG CAATTACGCC AAACGGTTGC
TGCTCTAACG ATTTTAGTGT GTTTGATTTT ACCAATGTAG ATAACAGCAA CACGCAAAAT
GAAAAAACAT CGGCTATTTA TGCCATGGCT AATTTCAACT TCGACGATGT GGTTGACGGC
AACATAGGTG TGCGTGTTGT TAAAACCGAA AACGTGGCCG ATGGTTATAT TCGCTTCCCT
AATTCGTTTG AAGTAAAAAC CGGCGAAGTG GATGGTGAGG GCAACGATGT AACAATTACC
CCATTTGCGG CTGATGATCT TCCCTACGAT GCAAAAAATG ACTATACCCA TGTGCTTCCT
AATTTGAATG TGCGCTGGAA GCTTACCGAT GAAGTTATTT TGCGTTTCGC TGCAGCAAAA
ACCATTTGGC GGCCAGAGTT TAATCGCTTA AAAGCGGTAA TGAATTTGAG TGCAGACTGG
GCTCAAGGCC AGTCGGAAGT ATTGGCAGAC GAATTTGATC CATCTCTTGT GCGTTTTAGT
TTGTCGGCCG ACGGCAACCC CAACTTGGTG CCAATGGAAT CAAACCAAAA TGATCTTAGC
CTTGAATGGT ATTTTGATGA AAACGGCGGA ATGGCTCACC TTAATTTGTT CCGCAAAAAT
ATTAGTAATT ACTTCCGCGA TGTGCCAGAT GGCAATATTC CAAGCTTTGG CGGTTACACA
AACATTGCAA CCTCGGGTGC AGCTAATATC GGCTCGGGCA AAATTAAAGG GGCTGAAGTT
GGCGTAACCA AATTCTTTGA TGAATTGCCC AAGCCGTTCG ATGGTCTTGG TTTAGCCGCA
AACTACACCT ATATCGATAG CCAAGAAGAT ATAGCTGAAG GTTTGGGAAG TGTCGATACC
GACGGCTCAG CATTTAATGA CATTCCGCTG GCGGGGTTAT CAGAAAACTC CTACAACTTT
GTGTTGATGT ACGACATCGA AGGGTTCTAT AGCCGCTTGG CATACAACTG GCGCAGTGAA
TACTTAGTAG CGGTTGCGCC GAATGGATGG AATGGCACCG ACAACGGTAT TACCTGGGGC
TTGCCTATTT ACAACAAAGA TTACGGCCAG CTTGACTTAA GTTTGGGGTA CAACTTTAAC
GATAATATTT CTGTTAATTT TGAAGCTTCA AACATTGGTA AAGCAAATAC CGAGGGTGTA
ATGCGACAAA ACGGCGCTGG CGATCACACT GCTTACGTTT ATTCGCAGGA TGTACGGTAT
GGCCTAGCTT TGCGCGTAAC TTTTTAA
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| Protein sequence | MCVMGVVNPV HAQEQETKEL EEVIVTGMRQ SILSAQQIKR DSNVVVDSIV AEDIGKLPDR
SVTEALARIP GISVSRYEDL GDPEHFAGEG SGVLVRGMSQ VRGELNGREI FSADGGRGLS
FDDVPAELMS GVDVYKSPSA DMIEGGLGGV VNLRTRLPFD SDGQLISATL KGNYGDLIDE
ANPEYSALYS NRWDTDAGEI GFLVDVSSSK LASRADNIYT RAFLPRTDLD VDGFDTVYVP
KGVDWRRNDY ERKRTGAYVA VQWAPNADVE FTYTGFTSTH KSRWDENAFF IDSGADSNLF
LTSQSTSEGA QPWVFDDGGS LVSGTITTAH NNFGSTDFTT DNTFGVPFGT SSRYSASDAT
TTDHSLAAMW QVSDRLKISS SLQMVDSTAD VDDNTLGLIT FPDEITVSGL NGTPSITAGG
FLDNLNNYSH GQSMVMRKKN EAKSKALRID AEYDFEDSIV SSVKAGVRFT DKSAYNAGGD
YNWSARYQPW QIGSEDWRPF NHTDDFPRLQ NENFVKYIEF DNFQRGGTAV PSSAYLIDHS
LLQDMEATTA AIDAITPNGC CSNDFSVFDF TNVDNSNTQN EKTSAIYAMA NFNFDDVVDG
NIGVRVVKTE NVADGYIRFP NSFEVKTGEV DGEGNDVTIT PFAADDLPYD AKNDYTHVLP
NLNVRWKLTD EVILRFAAAK TIWRPEFNRL KAVMNLSADW AQGQSEVLAD EFDPSLVRFS
LSADGNPNLV PMESNQNDLS LEWYFDENGG MAHLNLFRKN ISNYFRDVPD GNIPSFGGYT
NIATSGAANI GSGKIKGAEV GVTKFFDELP KPFDGLGLAA NYTYIDSQED IAEGLGSVDT
DGSAFNDIPL AGLSENSYNF VLMYDIEGFY SRLAYNWRSE YLVAVAPNGW NGTDNGITWG
LPIYNKDYGQ LDLSLGYNFN DNISVNFEAS NIGKANTEGV MRQNGAGDHT AYVYSQDVRY
GLALRVTF
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